Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr5:112136983:112137003:[+] chr11:65199489:65199509:[+] nonBSJ supported Exon

circRNA 5': CUCAGAACAAGCAUGAAACCG 3'


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target  3':UGAUUC-UGUUGAUUUUAUGGA 5'

 -6.80 30 RIC-seq
chr5:112136992:112137010:[+] chr11:65199500:65199522:[+] nonBSJ supported Exon

circRNA 5':AGCAUGAAACC--GGCUC--ACA 3'


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target  3':AUGU-CUUUAUAUCUGAUUCUGUU 5'

 -6.00 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:112136983:112137003:[+] circRNA 827018 chr5:112136985-112136986 C>T Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1|Classic_or_attenuated_familial_adenomatous_polyposis ClinVar
chr5:112136983:112137003:[+] circRNA 827089 chr5:112136995-112136996 A>ATG Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112136983:112137003:[+] circRNA 2583887 chr5:112136997-112136998 GAA>G Familial_adenomatous_polyposis_1 ClinVar
chr5:112136983:112137003:[+] circRNA 1759474 chr5:112136997-112136998 GA>G Familial_adenomatous_polyposis_1|Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112136983:112137003:[+] circRNA 1068687 chr5:112137002-112137003 C>CG Familial_adenomatous_polyposis_1 ClinVar
chr5:112136983:112137003:[+] circRNA 2694649 chr5:112137002-112137003 CG>C Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 827089 chr5:112136995-112136996 A>ATG Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112136992:112137010:[+] circRNA 2583887 chr5:112136997-112136998 GAA>G Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 1759474 chr5:112136997-112136998 GA>G Familial_adenomatous_polyposis_1|Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112136992:112137010:[+] circRNA 1068687 chr5:112137002-112137003 C>CG Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 2694649 chr5:112137002-112137003 CG>C Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 2583493 chr5:112137004-112137005 GC>T Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 428173 chr5:112137007-112137008 C>CA Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112136992:112137010:[+] circRNA 411489 chr5:112137007-112137008 C>G Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112136992:112137010:[+] circRNA 3231388 chr5:112137008-112137009 A>AC Hereditary_cancer-predisposing_syndrome ClinVar