Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr14:71413751:71413797:[+] chr11:65212511:65212561:[+] nonBSJ supported Exon

circRNA 5':AGAUAGGACUGCAAAUGAGUUCACGGAUCA-GCGAA----------CCAAAGC-UGAAC 3'


            |||||| |||| || |||| :| ||| || ||||


target  3':CCUAUCC--------ACUCCCGUCCCUAAAAUGAACGUAAAAUAUGGGUACCGAACUUA 5'

 -20.40 2 RIC-seq
chr14:71444163:71444198:[+] chr11:65203791:65203847:[+] nonBSJ supported Exon

circRNA 5': GCUUGAGGAGCCUGAG-----------------------CACACGGAGUAGUGGGUCAA 3'


            || |||||| ||| |||||:|| :|||||||


target  3':UCGUG-UCCUCGU-CUCCGGGUCCGUCCCGGAACGAAACUGUGUGUCUAC-UACCCAGUG 5'

 -37.40 2 RIC-seq
chr14:71444326:71444351:[+] chr11:65200310:65200333:[+] nonBSJ supported Exon

circRNA 5':AACAAAAAGU-GGGAGGAAGAAAGAGU 3'


            || ||||| |||||| |||||


target  3': UGAGUUUCACCCCUCCCA--UUCUCC 5'

 -20.40 2 RIC-seq
chr14:71444689:71444740:[+] chr11:65212764:65212808:[+] nonBSJ supported Exon

circRNA 5':AUCUUCUAGCGUAAUCCAUCGG-ACA-GC---UUCUGCCCACAAGUCAGGCA-GGAGA 3'


            |||:|||||:| || ||| || |:||||||| || :||| |:||


target  3':CAGAGGAUCGUA--------CCGUGUACGUAUAGGACGGGU--UCC--UCGUACUUC 5'

 -40.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:71413751:71413797:[+] circRNA - chr14:71413782-71413783 C>T PACA-CA ICGC
chr14:71444689:71444740:[+] circRNA - chr14:71444708-71444709 C>T BTCA-JP ICGC