Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr2:36606472:36606513:[+] chr11:65193073:65193107:[+] nonBSJ supported Exon

circRNA 5':UCUCAUGUU-UCUC-UCACCCAAACUGAAGUGGUCCAUUUAAAA 3'


            |:||| | |||| || ||||||||| :|||||


target  3':CGGGUAGAUUAGAGCAGAA--------UUCACCAGG-GAAUUUA 5'

 -24.60 1 RIC-seq
chr2:36607865:36607920:[+] chr11:65210388:65210450:[+] nonBSJ supported Exon

circRNA 5':AGCCAAAAAAUCAUCAGACUUUGAAAAUCAGUGAGGUCAG----------AGGACUGUUGCCACAC 3'


            |||| || ||||| |: |||||: ||||||| :|||||


target  3':CCGGUGA---AGGAGUCUAUUGGUAAGAUUGAUCCCAGUUUAAUAUGUAGUCCUGACUUUGGUGUU 5'

 -37.50 2 RIC-seq
chr2:36608242:36608264:[+] chr11:65192781:65192817:[+] nonBSJ supported Exon

circRNA 5':CUUCUUGCC---------------CCCGCCCCUACCCC 3'


            |:|:|||| | |:||||| |||


target  3':AGGGGACGGACACUCUACCGUAGUGUGUGGGGA-GGGA 5'

 -26.00 2 RIC-seq
chr2:36609675:36609727:[+] chr11:65208438:65208494:[+] nonBSJ supported Exon

circRNA 5':GAAGUCCUAGGAAUAGUGGUCC-------UGGUGCUAAAUAGAAAUG-UCGUGGUUA-UGGC 3'


            |||| ||||:|| :: || ||| ||| || |: ||:||:::| ||:|


target  3': UUCAUC--CCUUGUCUUU-GGUUCAAAAACC-CGAGUU-UCGGUGUGAGUACUGGUGACUGG 5'

 -26.20 1 RIC-seq
chr2:36614131:36614159:[+] chr11:65195044:65195080:[+] nonBSJ supported Exon

circRNA 5':AGAGA-----UGAGGUU-GA-AGAA-GUUUGCUGGGA 3'


            |||| |||| || |||| ||||:||:||


target  3':CCUCUACGGUACUCGUGUCUGUCUUCCAAAUGAUCCA 5'

 -24.60 1 RIC-seq
chr2:36615828:36615851:[+] chr11:65205287:65205310:[+] nonBSJ supported Exon

circRNA 5':AUGGCCCCUAGGUUAGGCAGAACU 3'


            |::|| ||||: :|||:|||


target  3':CAUUGGUAAUCCGUCUCGUUUUGC 5'

 -21.80 2 RIC-seq
chr2:36615830:36615851:[+] chr11:65205287:65205309:[+] nonBSJ supported Exon

circRNA 5': GGCCCCUAGGUUAGGCAGAACU 3'


            |:|| ||||: :|||:|||


target  3':AUUGGUAAUCCGUCUCGUUUUGC 5'

 -20.90 2 RIC-seq
chr2:36619502:36619548:[+] chr11:65212262:65212304:[+] nonBSJ supported Exon

circRNA 5': UUUCAGGCUAGGAGACUACAUCUUGUCA-CAUUUAGGGUACCA--GGAAA 3'


            ||:| || |||: :||:|| ||:|: :::| ||||


target  3':UAAGGAAGGACCCUU--------GACGGUAGUGAGCUUUACUUCAGCCUUC 5'

 -17.00 1 RIC-seq
chr2:36619726:36619746:[+] chr11:65207850:65207872:[+] nonBSJ supported Exon

circRNA 5': UAGCA--GAACUCUUGGGCUCAG 3'


            |||| ||||||:||||||||


target  3':CGUCGGAACUUGAGGACCCGAGU 5'

 -31.80 1 RIC-seq
chr2:36619945:36619976:[+] chr11:65212331:65212357:[+] nonBSJ supported Exon

circRNA 5':AGCGGGCAGAGAAUUGAAAGAGUUUACUCUCA 3'


            || || | |:| |::| ||||


target  3': CGGGCGGA-CGGAGCGGA---AGGUAAGAGA 5'

 -9.20 2 RIC-seq
chr2:36620910:36620944:[+] chr11:65195149:65195197:[+] nonBSJ supported Exon

circRNA 5': GUAAAGCA-----------UGGGAGCAGUU--CCUGCG-UGUUUCUGGU 3'


            |:|||||| |:|||: || |||| |||||||||


target  3':UCGUUUCGUUUCCCCAUUCUAUCCUU-UCCUCCGGACCUAACAAAGACCC 5'

 -31.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:65210388:65210450:[+] target - chr11:65210450-65210464 CTGTACGATTTCTG>- PACA-CA ICGC