Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr10:31663387:31663407:[+] chr11:65199064:65199084:[+] nonBSJ supported Exon

circRNA 5':UCACCCAUUUAGGUAGGUGCU 3'


            ||||||:| |:| | |||


target  3':UGUGGGUGAUACUACCGACGU 5'

 -19.70 1 RIC-seq
chr10:31664187:31664223:[+] chr11:65191015:65191055:[+] nonBSJ supported Exon

circRNA 5':UUAGAGAUCCAGGCAGUCCCC-CUUGUCA---GUGCUAGGA 3'


            ||| | || ||||||||| |:||||| :|||||||


target  3':CGUCGCACGGAGCGUCAGGGGCGGACAGUUUGUACGAUCCA 5'

 -47.30 2 RIC-seq
chr10:31665771:31665819:[+] chr11:65195585:65195669:[+] nonBSJ supported Exon

circRNA 5':CCUCA------UCUUAAAAA-UAUCC-UGCUUC-----AUUCAUAAAGUU-----------------------GUGCCAACGGAA 3'


            |||| ||| ||:|| ::|:|| |||||:|||||: :||| ||||||


target  3':UGAGUGACUUAAGAUAAUAUAAUGGGUGUGGAGACCUUUAAGUGUUUCAGACUUAAGUCUAGAUACGUAUUCCUACGUUUGCCUA 5'

 -33.70 2 RIC-seq
chr10:31666443:31666469:[+] chr11:65198184:65198211:[+] nonBSJ supported Exon

circRNA 5':AUUCAUUAAGGUGGUUUUAAU-UUCCAA 3'


            ||||:| | ||: :||||


target  3':CGAGUGACGGCUCCGUUACGGUGAGGUC 5'

 -12.60 1 RIC-seq
chr10:31668479:31668518:[+] chr11:65192025:65192085:[+] nonBSJ supported Exon

circRNA 5': UGGGUCAAUCUG------UGCCAGUCACACACAGGGCAGUC--------------------UGCCG 3'


            || || |||: : |||||| |:|||| :|||


target  3':GACGAAGG-AGAUUAUAUAGGGGUCAGA-----UUCCGUAAAUUUUAAUUUGUCGAGAAGUUGCGGG 5'

 -19.70 2 RIC-seq
chr10:31669246:31669299:[+] chr11:65212475:65212521:[+] nonBSJ supported Exon

circRNA 5':UUGGCUUGAAA----GACUUAAUUAGUUUCAGGUUCAGCUUUGGUUUUGGUGUUGAGG 3'


            ||||||||| ||||: || |||:|: :|||| :|: :||:|:|


target  3':UACCGAACUUAAAAACUGAG---AUAC--GUCUAG--UGAAAAUAG-----UAAUUUCC 5'

 -24.90 1 RIC-seq
chr10:31669408:31669451:[+] chr11:65203086:65203135:[+] nonBSJ supported Exon

circRNA 5':GGCAGUGGUGCCAACCCAAUCUCUCUAUUGAGAGUUUUC-----------UACCA 3'


            |||||| :|||||| |: :||||:: :|||


target  3': UGUCACAGUGGUUGGUCUACAC-GG---UUCUCGGUCUCGUCCACUUCUGUGGA 5'

 -27.40 1 RIC-seq
chr10:31673227:31673248:[+] chr11:65191991:65192010:[+] nonBSJ supported Exon

circRNA 5':UGGGCUAUGAACUGGUGCUGGU 3'


            |||||| ||||| |:|:


target  3': UCCGAUUCUUGAAGA-GGCUC 5'

 -18.30 2 RIC-seq
chr10:31674402:31674419:[+] chr11:65196672:65196689:[+] nonBSJ supported Exon

circRNA 5':UUGAUUUCAGCAUUUCUU 3'


            || |||||||||:|:


target  3':UACAUAAGUCGUAAGGGU 5'

 -16.60 2 RIC-seq
chr10:31674701:31674754:[+] chr11:65210204:65210257:[+] nonBSJ supported Exon

circRNA 5':AGCCUCAGCCUCUCAAAGU-GCUGGAAUUACAGGCAUGAGCCACCACACCUGGCC 3'


            |||||||||||:| ||| ||||| |:||||||| || ||||||| ||||||


target  3':ACGGAGUCGGAGGGC-UCAUCGACCCUGAUGUCCGCACGCGGUGGUACGGACCGA 5'

 -84.30 1 RIC-seq
chr10:31679251:31679294:[+] chr11:65208831:65208878:[+] nonBSJ supported Exon

circRNA 5':CAGGAUUUUAAUAAUCCUCCAAAA----AUCAG-CCUGUAAAC-UAGAAG 3'


            |||||: ||| |:||| || | ||| :||||


target  3': UCCUAGUGAACUCAGGUCUUCAAACUCUGGUCAGGCCCGUUGUGUCUU 5'

 -18.50 1 RIC-seq
chr10:31686141:31686172:[+] chr11:65198151:65198189:[+] nonBSJ supported Exon

circRNA 5': UCUAGGG--UACAUGUGCACAACAUCUU----GGGGUU 3'


            ||:|||| |||||||| ||| |:|:|


target  3':GAGGUCCCCUAUGUACACAUGUGAUUUAAAUGUCUCUAC 5'

 -25.10 1 RIC-seq
chr10:31686141:31686194:[+] chr11:65198129:65198189:[+] nonBSJ supported Exon

circRNA 5': UCUAGGG--UACAUGUGCACAACAUCUU----GGGGUUUUUUUAA-UGCAGUAAAUUAAAA 3'


            ||:|||| |||||||| ||| |:|:| :|: |||| |||||


target  3':GAGGUCCCCUAUGUACACAUGUGAUUUAAAUGUCUCUACGAGUGUCGACGUGCUA-AAUUUC 5'

 -30.90 1 RIC-seq
chr10:31686515:31686546:[+] chr11:65206301:65206335:[+] nonBSJ supported Exon

circRNA 5':UCUUUUGCACAACUGUUUAAAGCAGGAG---UCAA 3'


            ||| |:| ||||||||:| |||| |||


target  3':UGAACAUGCGUUGACAAGUAUCGUGGUAACAAGUA 5'

 -22.90 1 RIC-seq
chr10:31689117:31689180:[+] chr11:65208818:65208872:[+] nonBSJ supported Exon

circRNA 5':UUUUGUUUCCUUU-GUUC---ACUGGUCUGUCCUCAGC-ACAUAGAAAUAUAGUGUUUGG-CCCACGUUA 3'


            |||| ||| ||| ||::|||:| || |||:||||| |: |||||:|:


target  3':UGAACUCAGGUCUUCAAACUCUGGUCAGGCC-----CGUUGUGUCUUU----------CUGGGGUGUAGA 5'

 -34.90 1 RIC-seq
chr10:31690933:31690968:[+] chr11:65206744:65206779:[+] nonBSJ supported Exon

circRNA 5': UGCAAAGG--GAGUUUGUACCUAGGUAGAGCAGUACCU 3'


            |||||| | :|:|| ||| || |:| ||


target  3':AACGUUUGGUACAUAGACUAUUC-CCAGAUC-UUA-GGU 5'

 -15.10 1 RIC-seq
chr10:31691532:31691565:[+] chr11:65193004:65193039:[+] nonBSJ supported Exon

circRNA 5':UGCUGAAGUUU--CUUCCAGCU-UUGAAACAAUUGCU 3'


            ||| ||||||||| :||||| |||::|


target  3': CGAAAAGAUUCUGAAGGUCGAGGACUUUUUUAGUGU 5'

 -25.70 2 RIC-seq
chr10:31692443:31692478:[+] chr11:65204393:65204429:[+] nonBSJ supported Exon

circRNA 5':AGUGUCAACAUAUUCAA-UUCUUAGA--UGGAAUAAUGA 3'


            ||||||| :||| :||:| || ||||| ||


target  3': UACAGUUACCCUGGUUGGAGGAACUCCACCUUCG-ACC 5'

 -18.10 4 RIC-seq
chr10:31701626:31701675:[+] chr11:65191451:65191501:[+] nonBSJ supported Exon

circRNA 5':GAAUGCUAUGGACUCAU--UGGCUUGGUUUUUUAUUUC-CUUGGUUUCAGUCC 3'


            ||||||| |||||||: ||||: || :|::|| || |::||||:|| ||


target  3':GUUACGAU-CCUGAGUGUGACCGGUCCCUGAGGUACAGAGGGCCAAGGU-AGA 5'

 -49.30 1 RIC-seq
chr10:31701783:31701828:[+] chr11:65205212:65205254:[+] nonBSJ supported Exon

circRNA 5':CCAGCGAAGGUGGUAAAACUCUCCU-GUAUCCUCGAAGUAUAACUAA 3'


            ||| ||||| |:| || | |:|||||


target  3':AGUCUACCCCACCCCAGCCGAUCCCCCGUCA---CUCC-UGUUGAUC 5'

 -14.20 2 RIC-seq
chr10:31702103:31702130:[+] chr11:65209887:65209907:[+] nonBSJ supported Exon

circRNA 5':CUGUUCACCAGAUGCCUAAAACAUACAA 3'


            ||:|| | ||||| || |||


target  3': ACGAG-G----ACGGAAGC-GUCUGUC 5'

 -11.00 2 RIC-seq
chr10:31702871:31702915:[+] chr11:65209423:65209467:[+] nonBSJ supported Exon

circRNA 5':AUAGCCACAA---GCCCCUCUUUUCCUGUCAGCCCUGCAAAGACCGCC 3'


           |:|| ||| ||||| |:|| || | ||:|


target  3':UGUCUGUGACGUGCGGGGUCGUUAACUCC-UUGGU-CGCACC-GGUGU 5'

 -23.90 2 RIC-seq
chr10:31708203:31708244:[+] chr11:65201329:65201367:[+] nonBSJ supported Exon

circRNA 5':AUGCCCUGGGGGGAUAAGGUUUGUGGCAGCAGUAAAGCCGGA 3'


            || |||:||||| ||: ||| |||| || |||


target  3':AACCGGAUCCCCCA---CCGUCCUCCGCCGUCCCCUCCGCCC 5'

 -39.60 2 RIC-seq
chr10:31709786:31709831:[+] chr11:65203715:65203760:[+] nonBSJ supported Exon

circRNA 5':UGACUUCUUCACCAUUCUUUCUCUUCCUUCAUUCC-GUAGAUAUCGA 3'


            ||| | ||||| || :||| || | || ||:


target  3':CCUGUCGU-GUGGUCAGUGAGAUCCUCGACUCCGGUCUCCUUGAGUC 5'

 -18.00 1 RIC-seq
chr10:31709795:31709841:[+] chr11:65203715:65203751:[+] nonBSJ supported Exon

circRNA 5':CACCAUUCUUUCUCUUCCUUCAUUCCGUAGAUAUCGAGAUUUCUCAA 3'


            |||| || :||| ||: ||| ||||


target  3': UGGUCAGUGAGAUCCUCGACUCCGGU--------CUCCUU-GAGUC 5'

 -12.70 1 RIC-seq
chr10:31711032:31711069:[+] chr11:65197823:65197861:[+] nonBSJ supported Exon

circRNA 5':CACUGACCAGCAUGUAUUAA----AGUCACAAGACCAGUCUU 3'


            |||| |:|| ||||| || || ||||||| |:


target  3':AUGACCU-UUGUUU-UAAUUCACAUCUUUG-UCUGGUCUGGU 5'

 -19.10 2 RIC-seq
chr10:31711292:31711335:[+] chr11:65192180:65192227:[+] nonBSJ supported Exon

circRNA 5':UUCAGGAAUCUUCAUAUUGUGAAAUGU---GCAGU-AC-AUGUUUAAGG 3'


            ||| :|||| : ||:| ||: |||:| || |||:::||:


target  3':UGGUAAG-GGAAGAGGAUCAUUAGACGUUACGUUAGUGUUACGGGUUUG 5'

 -21.40 2 RIC-seq
chr10:31718764:31718834:[+] chr11:65207447:65207519:[+] nonBSJ supported Exon

circRNA 5':CUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCUG-AGUAGCUGGGAUUACA-GCCU--GCCACCAUGCCUGGCU 3'


            ||| :||| : |||:|||||||||||||||||: ||| |||||||:|||| || |||||||::||: |


target  3':AACCGGAGUCUACUAGGAGGACGGAGUCGGAGGGUGUCA-CGACCCUGAUGUCCGUACUCGGUGGUGUGGGUAG 5'

 -105.40 1 RIC-seq
chr10:31718775:31718834:[+] chr11:65207447:65207508:[+] nonBSJ supported Exon

circRNA 5':CGAUUCUCCUGCCUCAGCCUCCUG-AGUAGCUGGGAUUACA-GCCU--GCCACCAUGCCUGGCU 3'


            |||:|||||||||||||||||: ||| |||||||:|||| || |||||||::||: |


target  3':ACUAGGAGGACGGAGUCGGAGGGUGUCA-CGACCCUGAUGUCCGUACUCGGUGGUGUGGGUAG 5'

 -96.90 2 RIC-seq
chr10:31718988:31719025:[+] chr11:65198671:65198698:[+] nonBSJ supported Exon

circRNA 5':UGAGGGAAGGAUUGAUAUAAGAUUCUGACAUUCUGUUU 3'


            ||:||||||| :|||||||||| ||:|


target  3':UUUUCCUUCCU---------UUAAGACUGUAU-ACGAU 5'

 -28.40 2 RIC-seq
chr10:31720038:31720089:[+] chr11:65197653:65197684:[+] nonBSJ supported Exon

circRNA 5':UGGGGUAUGUGGAGGGGUUGAUCCACAACCCUAAACUGGCAGAGAGCUUGGG 3'


            |:||:| ||||:| |||| |||||||:::


target  3':UCUCCGU---CCUCUCAAG---------------UGACA--CUCUCGAGUUG 5'

 -30.60 1 RIC-seq
chr10:31720044:31720092:[+] chr11:65201778:65201831:[+] nonBSJ supported Exon

circRNA 5':AUGUGGAGGGGUUGAUCCACA--------------------ACCCUAAACUGGCAGAGAGCUUGGGUGU 3'


            |||:| :||: |||| ||||: |||| |||||


target  3':CACAUCGUCCUUU----GUGUCGUUUGACCAUUGUGACCAAUGGGGA--GACCU---------CCCACC 5'

 -25.90 1 RIC-seq
chr10:31720061:31720085:[+] chr11:65210922:65210964:[+] nonBSJ supported Exon

circRNA 5': CACAACCC-------UAAACU----------GGCAGAGAGCU 3'


            |||||| ||||| ||||||:|||


target  3':AGUGUUGUCACAUUUUAUUUGUGUACAUGUACCCGUCUUUCGU 5'

 -21.70 3 RIC-seq
chr10:31720062:31720085:[+] chr11:65210922:65210963:[+] nonBSJ supported Exon

circRNA 5': ACAACCC-------UAAACU----------GGCAGAGAGCU 3'


            ||||| ||||| ||||||:|||


target  3':GUGUUGUCACAUUUUAUUUGUGUACAUGUACCCGUCUUUCGU 5'

 -18.70 1 RIC-seq
chr10:31721757:31721777:[+] chr11:65199104:65199122:[+] nonBSJ supported Exon

circRNA 5':AGGAAAAGCUAUUUUUAAAAA 3'


            ||||| || |:||||


target  3':CCCUUUACGUUU--AGUUUUG 5'

 -8.90 1 RIC-seq
chr10:31722562:31722579:[+] chr11:65191897:65191914:[+] nonBSJ supported Exon

circRNA 5':ACAUCCCAUUU-UGUUGUA 3'


            |||| ||:| :|||||


target  3':CGUAGU-UAGACGCAACAC 5'

 -9.20 2 RIC-seq
chr10:31722562:31722586:[+] chr11:65191888:65191914:[+] nonBSJ supported Exon

circRNA 5':ACAUCCCAUUU-UGUUGUA-CAG-AACA 3'


            |||| ||:| :||||| || |||


target  3':CGUAGU-UAGACGCAACACCGUAGUUGC 5'

 -10.00 2 RIC-seq
chr10:31725301:31725325:[+] chr11:65211298:65211320:[+] nonBSJ supported Exon

circRNA 5': UUGGGAACCACACUUUUAUUCUGUU 3'


            |::|||||||| :|:|| |:


target  3':AGGUCCUUGGUGAC---GUGAGUCGG 5'

 -18.00 1 RIC-seq
chr10:31733635:31733674:[+] chr11:65204134:65204179:[+] nonBSJ supported Exon

circRNA 5':CAAAGAUC-AGAUAGUCGU------AGGUAUGCGGCGUUAUUUCUGA 3'


            |||||:| || :|| |:| ||:||||||| |:| :||:


target  3':UUUUCUGGUUCCGUCUGUACUUAUGUCUAUACGCCACGAAU-GGAUC 5'

 -29.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:65195585:65195669:[+] target rs566485035 chr11:65195588-65195589 C>T Biological Father: Schizophrenia GWAS Catalog
chr10:31689117:31689180:[+] circRNA - chr10:31689176-31689177 C>T PRAD-CA ICGC
chr10:31701626:31701675:[+] circRNA - chr10:31701649-31701650 G>C PACA-CA ICGC
chr10:31701783:31701828:[+] circRNA - chr10:31701788-31701789 G>A PACA-CA ICGC
chr11:65192180:65192227:[+] target - chr11:65192212-65192215 AGG>- PACA-CA ICGC
chr11:65195585:65195669:[+] target - chr11:65195649-65195650 A>G RECA-EU ICGC
chr11:65206744:65206779:[+] target - chr11:65206765-65206766 A>G PACA-CA ICGC
chr11:65207447:65207508:[+] target - chr11:65207469-65207470 T>C LAML-KR ICGC
chr11:65207447:65207519:[+] target - chr11:65207469-65207470 T>C LAML-KR ICGC