5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chr2:36596379:36596418:[+] | chr11:65192335:65192359:[+] | nonBSJ supported | Exon |
circRNA 5':GUCUAUGUUAGAAGGUGAGUUAGAGACCCCACUUG-CCCAC 3' ||: :||: |||||| ||||| target 3':GAGGGGCAG-----------------GGGGUGUUGAGGGUGG 5' |
-21.50 | 2 | RIC-seq |
| chr2:36596959:36597025:[+] | chr11:65211939:65212009:[+] | nonBSJ supported | Exon |
circRNA 5': CUUUGAGAGACAGGAAGCUAAU----UCCUUCUUUGAAUGUGUAGUUAA-CUUUGU-GCCAUUGGAU-GUAGGG 3' |: || ||| ||| ||: :||:|| :|| |||: ||: ||| :|| |:|||| target 3':CGGUAC-CUCCCUCC--CGGGGACCUCGGGGAG-GACGAUCACGAUUCCUCGAGUCUUCGG-GACGGGUCGUCCCA 5' |
-37.20 | 1 | RIC-seq |
| chr2:36601874:36601919:[+] | chr11:65196065:65196100:[+] | nonBSJ supported | Exon |
circRNA 5': UUCCUGAGUGCCUGGGCGUGCUCCAAACAGAUAGCUGUGAUUGUGU 3' |||||| |||| :| ||||||||| ||| | |:||| target 3':GAAGGACA-ACGG-----UAA-AGGUUUGUC-----ACAGUCAUACAA 5' |
-28.20 | 2 | RIC-seq |
| chr2:36602356:36602385:[+] | chr11:65208891:65208929:[+] | nonBSJ supported | Exon |
circRNA 5': CAGAG-GGCU-AGACGUUA---UCCAGCAA---GGGAC 3' || || |||| | || | :|||:|| |||| target 3':CGUGUCACCGAGUGUGGACAUUAGGGUUGUGAAACCCUC 5' |
-22.80 | 2 | RIC-seq |
| chr2:36604132:36604191:[+] | chr11:65194869:65194926:[+] | nonBSJ supported | Exon |
circRNA 5':UGUCUC----UUCAUGGGUUGGUCACUGAUUUCCCCUUUCAGGGUC-UGAAUCCCUUUCCC-UUGC 3' |:|: :||||||| || || ||| |||| |||| || |||||:: || ||| target 3':UCGGGACGUCGAGUACCCUUCCUUU--CUU-AGG---AAGU-CCAGUAC-UAGGGGGUGGUAAACA 5' |
-42.30 | 2 | RIC-seq |
| chr2:36606472:36606513:[+] | chr11:65193073:65193107:[+] | nonBSJ supported | Exon |
circRNA 5':UCUCAUGUU-UCUC-UCACCCAAACUGAAGUGGUCCAUUUAAAA 3' |:||| | |||| || ||||||||| :||||| target 3':CGGGUAGAUUAGAGCAGAA--------UUCACCAGG-GAAUUUA 5' |
-24.60 | 1 | RIC-seq |
| chr2:36607865:36607920:[+] | chr11:65210388:65210450:[+] | nonBSJ supported | Exon |
circRNA 5':AGCCAAAAAAUCAUCAGACUUUGAAAAUCAGUGAGGUCAG----------AGGACUGUUGCCACAC 3' |||| || ||||| |: |||||: ||||||| :||||| target 3':CCGGUGA---AGGAGUCUAUUGGUAAGAUUGAUCCCAGUUUAAUAUGUAGUCCUGACUUUGGUGUU 5' |
-37.50 | 2 | RIC-seq |
| chr2:36608242:36608264:[+] | chr11:65192781:65192817:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCUUGCC---------------CCCGCCCCUACCCC 3' |:|:|||| | |:||||| ||| target 3':AGGGGACGGACACUCUACCGUAGUGUGUGGGGA-GGGA 5' |
-26.00 | 2 | RIC-seq |
| chr2:36609675:36609727:[+] | chr11:65208438:65208494:[+] | nonBSJ supported | Exon |
circRNA 5':GAAGUCCUAGGAAUAGUGGUCC-------UGGUGCUAAAUAGAAAUG-UCGUGGUUA-UGGC 3' |||| ||||:|| :: || ||| ||| || |: ||:||:::| ||:| target 3': UUCAUC--CCUUGUCUUU-GGUUCAAAAACC-CGAGUU-UCGGUGUGAGUACUGGUGACUGG 5' |
-26.20 | 1 | RIC-seq |
| chr2:36614131:36614159:[+] | chr11:65195044:65195080:[+] | nonBSJ supported | Exon |
circRNA 5':AGAGA-----UGAGGUU-GA-AGAA-GUUUGCUGGGA 3' |||| |||| || |||| ||||:||:|| target 3':CCUCUACGGUACUCGUGUCUGUCUUCCAAAUGAUCCA 5' |
-24.60 | 1 | RIC-seq |
| chr2:36615828:36615851:[+] | chr11:65205287:65205310:[+] | nonBSJ supported | Exon |
circRNA 5':AUGGCCCCUAGGUUAGGCAGAACU 3' |::|| ||||: :|||:||| target 3':CAUUGGUAAUCCGUCUCGUUUUGC 5' |
-21.80 | 2 | RIC-seq |
| chr2:36615830:36615851:[+] | chr11:65205287:65205309:[+] | nonBSJ supported | Exon |
circRNA 5': GGCCCCUAGGUUAGGCAGAACU 3' |:|| ||||: :|||:||| target 3':AUUGGUAAUCCGUCUCGUUUUGC 5' |
-20.90 | 2 | RIC-seq |
| chr2:36619502:36619548:[+] | chr11:65212262:65212304:[+] | nonBSJ supported | Exon |
circRNA 5': UUUCAGGCUAGGAGACUACAUCUUGUCA-CAUUUAGGGUACCA--GGAAA 3' ||:| || |||: :||:|| ||:|: :::| |||| target 3':UAAGGAAGGACCCUU--------GACGGUAGUGAGCUUUACUUCAGCCUUC 5' |
-17.00 | 1 | RIC-seq |
| chr2:36619726:36619746:[+] | chr11:65207850:65207872:[+] | nonBSJ supported | Exon |
circRNA 5': UAGCA--GAACUCUUGGGCUCAG 3' |||| ||||||:|||||||| target 3':CGUCGGAACUUGAGGACCCGAGU 5' |
-31.80 | 1 | RIC-seq |
| chr2:36619945:36619976:[+] | chr11:65212331:65212357:[+] | nonBSJ supported | Exon |
circRNA 5':AGCGGGCAGAGAAUUGAAAGAGUUUACUCUCA 3' || || | |:| |::| |||| target 3': CGGGCGGA-CGGAGCGGA---AGGUAAGAGA 5' |
-9.20 | 2 | RIC-seq |
| chr2:36620910:36620944:[+] | chr11:65195149:65195197:[+] | nonBSJ supported | Exon |
circRNA 5': GUAAAGCA-----------UGGGAGCAGUU--CCUGCG-UGUUUCUGGU 3' |:|||||| |:|||: || |||| ||||||||| target 3':UCGUUUCGUUUCCCCAUUCUAUCCUU-UCCUCCGGACCUAACAAAGACCC 5' |
-31.00 | 2 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr11:65210388:65210450:[+] | target | - | chr11:65210450-65210464 | CTGTACGATTTCTG>- | PACA-CA | ICGC |
| chr11:65211939:65212009:[+] | target | - | chr11:65211940-65211941 | C>A | LICA-CN | ICGC |