Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865648:139865698:[+] chr12:13701969:13702029:[-] nonBSJ supported 3UTR

circRNA 5':AAUAC-AGA--UCUUCC---------------AGC-UAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            |:|| ||| |||| | ||| |||| | ||| |||:|| |||||


target  3':CUGUGAUCUCGAGAAAGUGACAAAAACCAAAUUCGUAUUACG-ACACUCGGUUUUAA-------AGAAG 5'

 -14.40 2 RIC-seq
chrX:139865810:139865865:[+] chr12:13696811:13696868:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAGAAAUCCAGGUC--UUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCU 3'


            | ||| ||| || ||| |:|| ||:|||| :||: :||:


target  3':AUGUUUGUUU-GGACCAAUCAGGGGACUUCGGUCAGGGAGAUACAAACAUAACUUAGGG 5'

 -26.60 2 RIC-seq
chrX:139865810:139865866:[+] chr12:13696811:13696867:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAGAAAUCCAGGUC--UUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUU 3'


            | ||| ||| || ||| |:|| ||:|||| :||: :||:


target  3':AUGUUUGUUU-GGACCAAUCAGGGGACUUCGGUCAGGGAGAUACAAACAUAACUUAGG 5'

 -26.30 1 RIC-seq
chrX:139865810:139865866:[+] chr12:13696811:13696868:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAGAAAUCCAGGUC--UUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUU 3'


            | ||| ||| || ||| |:|| ||:|||| :||: :||:


target  3':AUGUUUGUUU-GGACCAAUCAGGGGACUUCGGUCAGGGAGAUACAAACAUAACUUAGGG 5'

 -26.90 1 RIC-seq
chrX:139866328:139866364:[+] chr12:13709122:13709162:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUU-CCA-------GGAAAUCCGUGUCUUCCAGCAAA 3'


            ||||||:|| ||| |||| :|||: ||||


target  3': AGGUCCGGACCGGUACUGUACCCUUCGACU-UAGAGA--CGUUA 5'

 -25.80 2 RIC-seq
chrX:139866620:139866659:[+] chr12:13703117:13703163:[-] nonBSJ supported 3UTR

circRNA 5':AGG-----UCUUCCA-----GCAUCUCCAGGGCUUCCAGCAUCUGCUCGU 3'


            || ||||| :||| ||| :|| |:|||:


target  3':ACCAUUUAAGAAGACAUAAGUGUAU-GGU--UGAUGACACUAAAUGAGUC 5'

 -14.40 2 RIC-seq