Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865491:139865507:[+] chr21:35467909:35467924:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAAGAAGCUC 3'


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target  3':CUAGGUGGCUC-UCGAA 5'

 -11.70 18 RIC-seq
chrX:139866359:139866370:[+] chr21:35467917:35467928:[+] nonBSJ supported CDS

circRNA 5':AGCAAAUCCACG 3'


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target  3':AUGUCUAGGUGG 5'

 -11.80 16 RIC-seq
chrX:139866360:139866370:[+] chr21:35467917:35467928:[+] nonBSJ supported CDS

circRNA 5': GCAAAUCCACG 3'


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target  3':AUGUCUAGGUGG 5'

 -11.50 2 RIC-seq
chrX:139866640:139866656:[+] chr21:35468787:35468804:[+] nonBSJ supported CDS

circRNA 5': GGCUUCCA-GCAUCUGCU 3'


            |||:||| |||||| |


target  3':ACCGGAGGAACGUAGAGG 5'

 -24.10 1 RIC-seq
chrX:139866649:139866677:[+] chr21:35468783:35468807:[+] nonBSJ supported CDS

circRNA 5':CAUCUGCUCGUCUUCCAACAUCUCCACGU 3'


            ||||| |:||:| ||||||||||


target  3': UAGAC---CGGAGGAACGUAGAGGUGCU 5'

 -27.90 13 RIC-seq