Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866765:139866816:[+] chr15:93429401:93429427:[+] nonBSJ supported Exon

circRNA 5': CAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCC-AGUGUCUGCA 3'


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target  3':GGUUGCAGAG-------------------------UCAGAAGUUUUAC---CGUA 5'

 -22.80 9 RIC-seq
chrX:139866766:139866816:[+] chr15:93429401:93429426:[+] nonBSJ supported Exon

circRNA 5': AACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCC-AGUGUCUGCA 3'


            |||||||| :|||||| |:|| |||


target  3':GUUGCAGAG-------------------------UCAGAAGUUUUAC---CGUA 5'

 -19.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866765:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866766:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC