Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866387:139866413:[+] chr17:31122:31149:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAUCAAAUUAAU-GUCUUCCA 3'


            |:|: | || |:|:: |


target  3':CCGGGCCGCAGGCCCCCGUCCGGGGCGC 5'

 -6.10 3 RIC-seq
chrX:139866404:139866415:[+] chr17:31098:31115:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUC-----CAGC 3'


            ||||: ||||


target  3':CGCAGGCCCCCACGUCGC 5'

 -5.90 1 RIC-seq
chrX:139866404:139866415:[+] chr17:31128:31149:[-] nonBSJ supported CDS

circRNA 5':AUGUCU---------UCCAGC 3'


            ||||: :|| ||


target  3':CGCAGGCCCCCGUCCGGGGCGC 5'

 -6.30 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:31098:31115:[-] target - chr17:31101-31102 T>C PACA-CA ICGC