Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866359:139866429:[+]	chr20:628748:628808:[-]	nonBSJ supported	3UTR	circRNA 5':AGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCU---------ACUUGUGUCUUC 3' \|\|\| :\|\|\|\|\| \|\|:\|\|\|\|:\| \|:\|\|\| \|\|\| \|\| \|\| \|\|\|\| target 3':UCGAUCAAACCGGGAAGGAGA---------AGGAGGUGG----------GGAGGAAGGAACUUGCGUCUGUACUAAGAAC 5'	-29.40	1	RIC-seq
chrX:139866580:139866649:[+]	chr20:628757:628817:[-]	nonBSJ supported	3UTR	circRNA 5':AGCUA--CGUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAG-CAUC--UCCAGGGCUUCCAGC 3' \|\|: \| \|\|\|\|\|\| \|\|\|\|: :\|:\|\|\|\| \|\|\| \| \|\|\| \|\|\| \|\| \|\|\| \| \|\|\| target 3':CCGGGAAGGAGAAGG------AGGUG-GGGAGGA-----AGGAACUUGC-GUCUGUACUAAGAACCCCUAUGUC 5'	-36.80	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866580:139866649:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC