Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865636:139865662:[+] chr1:28975189:28975217:[+] nonBSJ supported Exon

circRNA 5':GGUCUUCC-AUCAAAUACAGAU-CUUCCA 3'


            |:|: |:|||| || |||||


target  3':ACGGGUUUAUGGUUUUUUAAUACGAAGGC 5'

 -14.10 20 RIC-seq
chrX:139865654:139865699:[+] chr1:28975189:28975226:[+] nonBSJ supported Exon

circRNA 5':GAUCUUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCA 3'


            ||| |||||| :||| :| |||:|||| |:|| |||||


target  3': UAGU-GGUCGAC-GGGUUUAU--GGUUUUUUA--AUAC-GAAGGC 5'

 -31.40 1 RIC-seq
chrX:139865659:139865698:[+] chr1:28975191:28975223:[+] nonBSJ supported Exon

circRNA 5':UCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            |||||| :||| :| |||:|||| |:|| ||||


target  3':UGGUCGAC-GGGUUUAU--GGUUUUUUA--AUAC-GAAG 5'

 -26.20 1 RIC-seq
chrX:139865659:139865699:[+] chr1:28975189:28975223:[+] nonBSJ supported Exon

circRNA 5':UCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCA 3'


            |||||| :||| :| |||:|||| |:|| |||||


target  3':UGGUCGAC-GGGUUUAU--GGUUUUUUA--AUAC-GAAGGC 5'

 -30.20 22 RIC-seq
chrX:139865868:139865891:[+] chr1:28975183:28975209:[+] nonBSJ supported Exon

circRNA 5':CACCAAAUCCAGGU-CUUCC--AGUCA 3'


            |||||| :| ||||| |:||


target  3':AUGGUUUUUUAAUACGAAGGCUUUAGA 5'

 -14.40 5 RIC-seq
chrX:139866284:139866327:[+] chr1:28975185:28975208:[+] nonBSJ supported Exon

circRNA 5':UCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUA-GCUUCCGAAAA 3'


            |||:||||| || ||||||||||


target  3':UGGUUUUUUA---------------------AUACGAAGGCUUUA 5'

 -19.60 2 RIC-seq
chrX:139866304:139866327:[+] chr1:28975185:28975216:[+] nonBSJ supported Exon

circRNA 5':CCUCAAAU-CCAUA-------GCUUCCGAAAA 3'


            |:||||| ||| ||||||||||


target  3':CGGGUUUAUGGUUUUUUAAUACGAAGGCUUUA 5'

 -22.50 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866284:139866327:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866304:139866327:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC