Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865912:139865951:[+] chr1:28975181:28975216:[+] nonBSJ supported Exon

circRNA 5':AUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCC 3'


            ||||::| |||: ||| |||| ||||| :|| ||


target  3':CGGGUUUAU--GGUUUUUUA-AUAC-GAAGGCUUUAGAGA 5'

 -21.30 2 RIC-seq
chrX:139866230:139866285:[+] chr1:28975179:28975222:[+] nonBSJ supported Exon

circRNA 5':UCCAGCAAGUCCACGUCUUCCAACAAAGCCAUGUCUUCCAGACUAUCCAUGUCUUC 3'


            ||||| |:||| :| |||| ||| ||| ||||| || ||| ||||


target  3': GGUCGA-CGGGUUUAU--GGUUUUUUAA-UAC-GAAGG-CUU-UAG----AGAAC 5'

 -28.20 1 RIC-seq