Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866619:139866650:[+] chr19:7518449:7518487:[+] nonBSJ supported CDS

circRNA 5': CAGGUCU----UCCA-GC-AUCUCCA--GGGCUUCCAGCA 3'


            ||||||: ||| || |||||| :||| ||


target  3':AGUCCAGGUAGAAGGGACGCUAGAGGGACUCCGCGAC-CG 5'

 -32.10 2 RIC-seq
chrX:139866619:139866661:[+] chr19:7518444:7518487:[+] nonBSJ supported CDS

circRNA 5': CAGGUCU----UCCA-GC-AUCUCCA--GGGCUUCCAGCAUCUGCUCGUCU 3'


            ||||||: ||| || |||||| :||| || ||:| ||


target  3':AGUCCAGGUAGAAGGGACGCUAGAGGGACUCCG-----CGAC--CGGGAAG 5'

 -35.60 20 RIC-seq