Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866759:139866783:[+] chr19:38076760:38076780:[+] nonBSJ supported Exon

circRNA 5':GUCUUCCAACGUCUCCAGUGUGCUG 3'


            ||:| ||| : |||:


target  3': AGGAAAAAAAUGAGU--GGACGG 5'

 -7.70 3 RIC-seq
chrX:139866760:139866783:[+] chr19:38076760:38076779:[+] nonBSJ supported Exon

circRNA 5':UCUUCCAACGUCUCCAGUGUGCUG 3'


            ||| ||| : |||:


target  3':GGAAAAAAAU-GAGU--GGACGG 5'

 -6.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:38076760:38076779:[+] target - chr19:38076764-38076765 G>T PACA-CA ICGC
chr19:38076760:38076780:[+] target - chr19:38076764-38076765 G>T PACA-CA ICGC