Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866313:139866371:[+] chr18:47017929:47017990:[-] nonBSJ supported 5UTR

circRNA 5':CAUAGCUU-CCGAAAAAUC-CAGGUCUUCC---AGGAAAU--CCGUGUC-UUCCAGCAAAUCCACGU 3'


            ||||| ||: || |||:|| || |||||| | |||| ||| ||| ||||


target  3':UUAUCGCUUGGUAAA--AGUGUCUAGU-GGAUCUCCUUUCAUGUCACAUUAAGACAGUUA---UGCAU 5'

 -26.20 20 RIC-seq
chrX:139866315:139866347:[+] chr18:47017932:47017964:[-] nonBSJ supported 5UTR

circRNA 5':UAGCUU-CCGAAAAAUC-CAGGUCUUCC---AGGAAAU 3'


            ||| ||: || |||:|| || ||||||


target  3': UCGCUUGGUAAA--AGUGUCUAGU-GGAUCUCCUUU 5'

 -17.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866313:139866371:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866315:139866347:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC