Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865499:[+] chr14:50329364:50329390:[-] nonBSJ supported Exon

circRNA 5':AUGUCUUCCGGACAAU-CCAUGUCUUCCA 3'


            ||| |||||: || || :||


target  3':GGCA-AAGGCUGGACCCGGCCAAGUGGG 5'

 -13.30 1 RIC-seq
chrX:139865472:139865518:[+] chr14:50329322:50329372:[-] nonBSJ supported Exon

circRNA 5':AUGUCUUCCGG--ACA-AUC--CAUGUCUUCCAAGAA--GCUCCAAGUCUUCCA 3'


            ||: ||| || ||| ||:| || ||||| || ||||


target  3':CGCGCUAGGGUGAUGACUAGUCGUGCCCUCAAAACUGGACGAGG--CA-AAGGC 5'

 -18.80 1 RIC-seq
chrX:139865839:139865877:[+] chr14:50329472:50329528:[-] nonBSJ supported Exon

circRNA 5':CAGUGU-CU----UCCAGAAAAAUCUACG-----------UCUUCCACCAAA---UCC 3'


            ||:|: || :|||||| ||: :||:||||| |||


target  3':AUCGCGUGAUGUCGGGUCUUG--AGGACCCGAGUUCGCUAGGAGGGUGGAGUCGGAGGG 5'

 -25.40 1 RIC-seq
chrX:139865860:139865907:[+] chr14:50329322:50329374:[-] nonBSJ supported Exon

circRNA 5':ACGUC-UUCCACCAAAUCCAGGUCUUCCAGUCAAU-CCACAUCU---UCCGGA 3'


            ||: |:|||| :|: ||| || ||: ||||:


target  3':CGCGCUAGGGUGAUGACUAGUCGUGCCCUCAAAACUGGACGAGGCAAAGGCUG 5'

 -19.60 1 RIC-seq
chrX:139865874:139865922:[+] chr14:50329315:50329366:[-] nonBSJ supported Exon

circRNA 5':AUC-CAGGUCUUCCAGUCAAUCCAC-----AUCUUC-CGGAAAAAAU--CCAGGUCUU 3'


            || ||||: |: :|||| ||| | ||| || | ||:


target  3':AAGUGUCCG------CGCUAGGGUGAUGACUAGUCGUGCCCUCAAAACUGGACGAGGC 5'

 -20.10 1 RIC-seq
chrX:139866681:139866733:[+] chr14:50329293:50329345:[-] nonBSJ supported Exon

circRNA 5':CCAGCAUCUCUGUGUCUUCCAGCAUCUUCAU----GUCUUCCAACAACUACCCAGUC 3'


            ||| |||: || ||||: |: ||| || ||| |||:


target  3':AGUCCGACCU-CACGUCAC--CGAU-AAGUGUCCGCGCUAGGGUGAUGACUAGUCGU 5'

 -18.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865860:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865874:139865922:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC