Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865656:139865694:[+] chr14:50329417:50329455:[-] nonBSJ supported Exon

circRNA 5':UCUUCCAGCUAAU--CCAUGUCUU--CCAGAAAAAUCUGUGUC 3'


            ||:|| ||||:| || ||| |||:


target  3':CGAGGGCCCUCCAGUGGUAUAACUACGG-CUUGAAU--CACG 5'

 -14.30 1 RIC-seq
chrX:139865685:139865708:[+] chr14:50329372:50329395:[-] nonBSJ supported Exon

circRNA 5':AAUCUGUGUCUUC-CACCAAAUCCA 3'


            |:||| |:| |||| |||


target  3':CUGGACCCGGCCAAGUGGGG-AGGA 5'

 -17.00 1 RIC-seq
chrX:139865782:139865788:[+] chr14:50329293:50329299:[-] nonBSJ supported Exon

circRNA 5':CCAGGUC 3'


            ||||:


target  3':AGUCCGA 5'

 -7.60 16 RIC-seq
chrX:139866316:139866332:[+] chr14:50329360:50329382:[-] nonBSJ supported Exon

circRNA 5':AGCU-----UCCGAAAAAU-CCA 3'


            ||| ||||| ||


target  3':ACGAGGCAAAGGCUGGACCCGGC 5'

 -10.10 1 RIC-seq
chrX:139866316:139866334:[+] chr14:50329360:50329384:[-] nonBSJ supported Exon

circRNA 5':AGCU-----UCCGAAAAAU-CCAGG 3'


            ||| ||||| || ||


target  3':ACGAGGCAAAGGCUGGACCCGG-CCA 5'

 -11.00 6 RIC-seq
chrX:139866409:139866428:[+] chr14:50329508:50329527:[-] nonBSJ supported Exon

circRNA 5':UUCCAGCCUACUUGUGUCUU 3'


            ||| ||:||:| |:||:


target  3':UAGGA-GGGUGGAGUCGGAGG 5'

 -17.50 2 RIC-seq
chrX:139866409:139866429:[+] chr14:50329508:50329528:[-] nonBSJ supported Exon

circRNA 5':UUCCAGCCUACUUGUGUCUUC 3'


            ||| ||:||:| |:||:|


target  3':UAGGA-GGGUGGAGUCGGAGGG 5'

 -19.10 5 RIC-seq
chrX:139866481:139866521:[+] chr14:50329367:50329417:[-] nonBSJ supported Exon

circRNA 5': UUCCAACAAAGGUACG------UCUUCC--AGAAAAUCCAC--GUCUUCCA 3'


            |||| || ||: || :|:||| || ||:| |||::||


target  3':AAAGGCUGGACCCG-GCCAAGUGGGGAGGAAUCCGUUGGACCACCAGGGGGC 5'

 -25.30 1 RIC-seq
chrX:139866526:139866559:[+] chr14:50329304:50329344:[-] nonBSJ supported Exon

circRNA 5':AGCCAUGUCU--UC-CAGAAAA---UCCACGUCUUC-CAGA 3'


            || || || || ||| :|||| || |||


target  3':ACGUCACCGAUAAGUGUCCGCGCUAGGGUGAUGACUAGUCG 5'

 -12.40 7 RIC-seq
chrX:139866673:139866718:[+] chr14:50329330:50329395:[-] nonBSJ supported Exon

circRNA 5': CACGUCUUC-CAGCAU---------------CUCUGUGUCUU-CCA--GCAUCUUCAUGUCUUCC 3'


            ||| || |||||: |||:|| ||: || || ||||: :||:|


target  3':GGUGAUGACUAGUCGUGCCCUCAAAACUGGACGAGGCAAAGGCUGGACCCGGCCAAGUGGGGAGGA 5'

 -32.60 34 RIC-seq
chrX:139866681:139866718:[+] chr14:50329340:50329395:[-] nonBSJ supported Exon

circRNA 5':CCAGCAU---------------CUCUGUGUCUU-CCA--GCAUCUUCAUGUCUUCC 3'


            |||||: |||:|| ||: || || ||||: :||:|


target  3':AGUCGUGCCCUCAAAACUGGACGAGGCAAAGGCUGGACCCGGCCAAGUGGGGAGGA 5'

 -30.60 1 RIC-seq
chrX:139866726:139866735:[+] chr14:50329328:50329338:[-] nonBSJ supported Exon

circRNA 5':ACCCAGU-CUU 3'


            |||| | ||


target  3':AGGGUGAUGAC 5'

 -7.20 2 RIC-seq
chrX:139866726:139866742:[+] chr14:50329328:50329343:[-] nonBSJ supported Exon

circRNA 5':ACCCAGU-CUUCCAUCAA 3'


            |||| | || ||||


target  3':AGGGUGAUGAC--UAGUC 5'

 -9.50 4 RIC-seq
chrX:139866726:139866746:[+] chr14:50329328:50329349:[-] nonBSJ supported Exon

circRNA 5':ACCCAGU-CUUCCAUCAAC-UGG 3'


            |||| | || |||| | :||


target  3':AGGGUGAUGAC--UAGUCGUGCCC 5'

 -11.10 1 RIC-seq
chrX:139866727:139866751:[+] chr14:50329316:50329343:[-] nonBSJ supported Exon

circRNA 5':CC-CAGUC----UUCCAUCAACUGGCUCAA 3'


            | ||| | |:|||: ||||: |||


target  3':AGUGUCCGCGCUAGGGUGA-UGACU-AGUC 5'

 -12.90 2 RIC-seq
chrX:139866728:139866758:[+] chr14:50329305:50329334:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAU 3'


            |||| || || ||| | || :|||:


target  3':CGUCACCGAUAAG-UGUCCGCGCUA-GGGUGA 5'

 -13.60 2 RIC-seq
chrX:139866728:139866759:[+] chr14:50329305:50329334:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAUG 3'


            |||| || || ||| | || :|||:


target  3':CGUCACCGAUAAG-UGUCCGCGCUA-GGGUGA 5'

 -13.80 1 RIC-seq
chrX:139866728:139866762:[+] chr14:50329305:50329338:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAUGUCU 3'


            |||| || || ||| | || :|||: ||


target  3':CGUCACCGAUAAG-UGUCCGCGCUA-GGGUGAUGAC 5'

 -15.90 1 RIC-seq
chrX:139866728:139866770:[+] chr14:50329305:50329348:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAUGUCU--UCCA-ACGU 3'


            |||| || || ||| | || :|||: || || |||


target  3':CGUCACCGAUAAG-UGUCCGCGCUA-GGGUGAUGACUAGUCGUGCC 5'

 -18.10 12 RIC-seq
chrX:139866728:139866778:[+] chr14:50329293:50329345:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAUGUCUUCCAACGUCUC--CAGUG 3'


            ||| || ||||| :|: :|: ||| || || |||:


target  3':AGUCCGACCUCACGUCACCGAUAAGUGUCCGCGCUAGGGUGAUGACUAGUCGU 5'

 -19.30 2 RIC-seq
chrX:139866728:139866787:[+] chr14:50329305:50329342:[-] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAUCAACUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCU 3'


            |||| || || ||| | || :|||: |:||||||


target  3':CGUCACCGAUAAG-UGUCCGCGCUA-GGGUG--------------------AUGACUAGU 5'

 -21.90 1 RIC-seq
chrX:139866738:139866770:[+] chr14:50329315:50329348:[-] nonBSJ supported Exon

circRNA 5':AUCAACUGGCUCAAUAUCCAUGUCU--UCCA-ACGU 3'


            || || ||| | || :|||: || || |||


target  3':AAG-UGUCCGCGCUA-GGGUGAUGACUAGUCGUGCC 5'

 -15.40 1 RIC-seq
chrX:139866742:139866770:[+] chr14:50329317:50329348:[-] nonBSJ supported Exon

circRNA 5': ACUGGCUCAAUAUCCAUGUCU--UCCA-ACGU 3'


            || ||| | || :|||: || || |||


target  3':GUGUCCGCGCUA-GGGUGAUGACUAGUCGUGCC 5'

 -14.60 1 RIC-seq
chrX:139866744:139866770:[+] chr14:50329320:50329348:[-] nonBSJ supported Exon

circRNA 5':UGGCUCAAUAUCCAUGUCU--UCCA-ACGU 3'


            ||| | || :|||: || || |||


target  3':UCCGCGCUA-GGGUGAUGACUAGUCGUGCC 5'

 -13.80 1 RIC-seq
chrX:139866746:139866775:[+] chr14:50329290:50329331:[-] nonBSJ supported Exon

circRNA 5': GCUCAAUAUCCA-UGUC-------UUC-CAA-CGUC-UCCA 3'


            ||||| ||: ||| || ||: |||


target  3':ACGAGUCCGACCUCACGUCACCGAUAAGUGUCCGCGCUAGGG 5'

 -10.70 3 RIC-seq
chrX:139866754:139866770:[+] chr14:50329328:50329348:[-] nonBSJ supported Exon

circRNA 5': UCCAUGUCU--UCCA-ACGU 3'


            ||||: || || |||


target  3':AGGGUGAUGACUAGUCGUGCC 5'

 -8.80 1 RIC-seq
chrX:139866754:139866770:[+] chr14:50329329:50329348:[-] nonBSJ supported Exon

circRNA 5':UCCAUGUCU--UCCA-ACGU 3'


            |||: || || |||


target  3':GGGUGAUGACUAGUCGUGCC 5'

 -8.50 3 RIC-seq
chrX:139866768:139866774:[+] chr14:50329277:50329283:[-] nonBSJ supported Exon

circRNA 5':CGUCUCC 3'


            |||||


target  3':CCAGAGC 5'

 -7.20 6 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866332:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866316:139866334:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC