Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866354:139866394:[+] chr11:102921786:102921835:[-] nonBSJ supported Exon

circRNA 5':CUUCCAGCAAAUCCACGUCUUCCA--------ACAAAGCCA--UGUCUUCC 3'


            |||||: ||||||| :|||| || || |||| ::|| ||


target  3':CAAGGUUAUUUAGGU-UAGAAUGUAGUAUUUCUGAUUCGAAUGGUAGU-GGU 5'

 -22.80 1 RIC-seq
chrX:139866354:139866395:[+] chr11:102921786:102921836:[-] nonBSJ supported Exon

circRNA 5':CUUCCAGCAAAUCCACGUCUUCCA--------ACAAAGCCA--UGUCUUCCA 3'


            |||||: ||||||| :|||| || || |||| ::|| |||


target  3':CAAGGUUAUUUAGGU-UAGAAUGUAGUAUUUCUGAUUCGAAUGGUAGU-GGUU 5'

 -24.60 1 RIC-seq
chrX:139866354:139866396:[+] chr11:102921786:102921831:[-] nonBSJ supported Exon

circRNA 5':CUUCCAGCAAAUCCACGUCUUCCAACA--AAG-CCAUGUCUU-CCAU 3'


            |||||: ||||||| :|||| || || ||| | | ||| ||||


target  3':CAAGGUUAUUUAGGU-UAGAAUGUAGUAUUUCUGAUUC-GAAUGGUAG 5'

 -24.60 14 RIC-seq
chrX:139866354:139866433:[+] chr11:102921786:102921837:[-] nonBSJ supported Exon

circRNA 5':CUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCAAC 3'


            |||||: ||||||| :|||| ||||| ||| | || ||| |||: :|| ||||


target  3':CAAGGUUAUUUAGGU-------------------UAGAAUGUAGU---AUUUCUGAU--UCGAAUGG---UAGU-GGUUA 5'

 -31.50 16 RIC-seq
chrX:139866355:139866433:[+] chr11:102921786:102921836:[-] nonBSJ supported Exon

circRNA 5': UUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCAAC 3'


            |||||: ||||||| :|||| ||||| ||| | || ||| |||: :|| ||||


target  3':CAAGGUUAUUUAGGU-------------------UAGAAUGUAGU---AUUUCUGAU--UCGAAUGG---UAGU-GGUU 5'

 -31.20 1 RIC-seq
chrX:139866358:139866396:[+] chr11:102921789:102921831:[-] nonBSJ supported Exon

circRNA 5': CAGCAAAUCCACGUCUUCCAACA--AAG-CCAUGUCUU-CCAU 3'


            ||: ||||||| :|||| || || ||| | | ||| ||||


target  3':GGUUAUUUAGGU-UAGAAUGUAGUAUUUCUGAUUC-GAAUGGUAG 5'

 -19.10 1 RIC-seq
chrX:139866372:139866433:[+] chr11:102921786:102921837:[-] nonBSJ supported Exon

circRNA 5':CUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGUGUCUUCCAAC 3'


            |||||| ||| ||| :|||| ||||| ||| | || ||| |||: :|| ||||


target  3':CAAGGUUAUUUAGGU-UAGAAUGUAGU---AUUUCUGAU--UCGAAUGG---UAGU-GGUUA 5'

 -30.50 1 RIC-seq