Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865435:139865441:[+] chr4:47436687:47436693:[+] nonBSJ supported Exon

circRNA 5':CUGAGCU 3'


            |||:|


target  3':UACUUGC 5'

 -5.20 2 RIC-seq
chrX:139865435:139865467:[+] chr4:47436672:47436699:[+] nonBSJ supported Exon

circRNA 5':CUGAGCUUCCAGAAAAUCCACAUCUUCCAGACA 3'


            |||| ||| ||||


target  3':CACUCAUA---CUUGCUCACCACCUCU-UCUG 5'

 -5.40 10 RIC-seq
chrX:139865436:139865471:[+] chr4:47437758:47437788:[+] nonBSJ supported Exon

circRNA 5':UGAGCUUCCAGAAAAUCCACAUCUUCCAG--ACAAUCC 3'


            ||| |||||||| ||| |||| || |||


target  3':CCUCC---GUCUUUUAC--GUA-AAGGAACAUG-UAGA 5'

 -13.60 6 RIC-seq
chrX:139865689:139865753:[+] chr4:47437679:47437723:[+] nonBSJ supported Exon

circRNA 5':UGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCC 3'


            ||||| || |||| :|:|| :|| |||| ||||:||||||


target  3':UUACAGUUCUUGAC--AGGUA-GGGAGAAUAU----AUCA-------------AGAUUUAGAAGA 5'

 -24.10 13 RIC-seq
chrX:139865754:139865769:[+] chr4:47437706:47437721:[+] nonBSJ supported Exon

circRNA 5':AGUCAAUCAGUGUCUU 3'


            ||||| | ||||:


target  3':ACAGUUCUUGACAGGU 5'

 -11.90 1 RIC-seq
chrX:139865754:139865772:[+] chr4:47437702:47437721:[+] nonBSJ supported Exon

circRNA 5':AGUCAAUCAGUGUCU-UCCA 3'


            ||||| | ||||: |||


target  3':ACAGUUCUUGACAGGUAGGG 5'

 -15.80 11 RIC-seq
chrX:139865959:139865980:[+] chr4:47435137:47435179:[+] nonBSJ supported Exon

circRNA 5': CCAGAAAAUCCA---------------------UGUCUUCCAG 3'


            |||| :||| |||||||||


target  3':UGGUCCAG-GGGUUAGUAUAAUUAUUAAGGUUCCACAGAAGGUA 5'

 -19.60 4 RIC-seq