Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865492:139865507:[+] chr9:111899597:111899612:[-] nonBSJ supported 3UTR

circRNA 5':GUCUUCCAAGAAGCUC 3'


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target  3':AAGAAGGUUUUUCGAC 5'

 -20.80 61 RIC-seq
chrX:139865493:139865507:[+] chr9:111899597:111899612:[-] nonBSJ supported 3UTR

circRNA 5': UCUUCCAAGAAGCUC 3'


            ||||||||:|||||


target  3':AAGAAGGUUUUUCGAC 5'

 -20.80 2 RIC-seq
chrX:139865992:139866007:[+] chr9:111897324:111897338:[-] nonBSJ supported 3UTR

circRNA 5': CUUCCAGUAACCUCCC 3'


            |:|||| |||||


target  3':AGGAGGUAG--GGAGGA 5'

 -17.70 8 RIC-seq
chrX:139866614:139866642:[+] chr9:111897321:111897342:[-] nonBSJ supported 3UTR

circRNA 5':AUCUCCAGGUCUUCCAGCAUCUCCAGGGC 3'


            ||||| |||| :|||| ||


target  3':AAGAGG------AGGUAG-GGAGGAACCU 5'

 -20.40 5 RIC-seq