Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865995:139866017:[+] chr14:20811352:20811382:[-] nonBSJ supported Exon

circRNA 5': CCAGUAACCUCCCAGUCU-------UCCAG 3'


            || | |||||| ||||


target  3':CGGCCCGGGGAGGGGCUUCCCGCCCCAGGUG 5'

 -14.60 24 RIC-seq
chrX:139866013:139866028:[+] chr14:20811361:20811383:[-] nonBSJ supported Exon

circRNA 5': UCCA-GAAAA------UCCACGU 3'


            ||| ||| ||||||


target  3':GAGGGGCUUCCCGCCCCAGGUGC 5'

 -10.20 1 RIC-seq
chrX:139866026:139866054:[+] chr14:20811319:20811338:[-] nonBSJ supported Exon

circRNA 5':CGUCUUCCCAACAAUCCAAGUCUUCCGGA 3'


            |||| ||||||: |||||


target  3':UCAGACA-------AGGUUCG--AGGCCG 5'

 -19.20 11 RIC-seq
chrX:139866500:139866514:[+] chr14:20811361:20811382:[-] nonBSJ supported Exon

circRNA 5': UCCA-GAAAA------UCCACG 3'


            ||| ||| |||||


target  3':GAGGGGCUUCCCGCCCCAGGUG 5'

 -8.90 1 RIC-seq
chrX:139866500:139866515:[+] chr14:20811361:20811383:[-] nonBSJ supported Exon

circRNA 5': UCCA-GAAAA------UCCACGU 3'


            ||| ||| ||||||


target  3':GAGGGGCUUCCCGCCCCAGGUGC 5'

 -10.20 1 RIC-seq
chrX:139866536:139866550:[+] chr14:20811361:20811382:[-] nonBSJ supported Exon

circRNA 5': UCCA-GAAAA------UCCACG 3'


            ||| ||| |||||


target  3':GAGGGGCUUCCCGCCCCAGGUG 5'

 -8.90 1 RIC-seq
chrX:139866536:139866551:[+] chr14:20811361:20811383:[-] nonBSJ supported Exon

circRNA 5': UCCA-GAAAA------UCCACGU 3'


            ||| ||| ||||||


target  3':GAGGGGCUUCCCGCCCCAGGUGC 5'

 -10.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:20811319:20811338:[-] target - chr14:20811335-20811336 C>G PACA-CA ICGC