Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865781:139865829:[+] chr14:61346512:61346554:[+] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCC-AGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUU 3'


            |||:||||||| ||: |||: | || ||| ||| ||||:


target  3':GGGUUCAGAAGGAUCGUAGAGUU-C-GA--GUC---CUUGUACACCAGGU 5'

 -33.00 1 RIC-seq
chrX:139865781:139865830:[+] chr14:61346503:61346554:[+] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCC-AGUCAAUCAGUGUCUUCCAGAAAGAAA--UCCAG--GUCUUC 3'


            |||:||||||| ||: |||: |: || ||| |||| ||||:


target  3':GGGUUCAGAAGGAUCGUAGAGUU-CG--AGUCCUUGUACACCAGGUAUACAGAGA 5'

 -34.40 18 RIC-seq
chrX:139865781:139865847:[+] chr14:61346498:61346554:[+] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCC-AGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUU 3'


            |||:||||||| ||: |||: | || ||| ||| ||||: :| ||| |:|||


target  3':GGGUUCAGAAGGAUCGUAGAGUU-C-GA--GUC---CUUGUACACCAGG----UAUACAGAGAUAGAC 5'

 -39.50 17 RIC-seq
chrX:139865782:139865830:[+] chr14:61346503:61346554:[+] nonBSJ supported Exon

circRNA 5': CCAGGUCUUCC-AGUCAAUCAGUGUCUUCCAGAAAGAAA--UCCAG--GUCUUC 3'


            |||:||||||| ||: |||: |: || ||| |||| ||||:


target  3':GGGUUCAGAAGGAUCGUAGAGUU-CG--AGUCCUUGUACACCAGGUAUACAGAGA 5'

 -34.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:61346498:61346554:[+] target - chr14:61346553-61346554 G>T LICA-CN ICGC
chr14:61346503:61346554:[+] target - chr14:61346553-61346554 G>T LICA-CN ICGC
chr14:61346512:61346554:[+] target - chr14:61346553-61346554 G>T LICA-CN ICGC