5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865412:139865466:[+] | chr17:62521889:62521944:[+] | nonBSJ supported | CDS |
circRNA 5':AUCUCAAG----GUCUUCCAGAUAAUCCUGAGCUUCCAGAAAA-UCCA-CAUCUUCCAGAC 3' ||:|| |:||| || :||: ||: |||||| |||| ||||| ||| target 3':AAGGGUAAACGACGGAAA-UCCGUUGAACCUUUAAU-UCUUUUCAGGUAGUAGA---UCUA 5' |
-21.90 | 6 | RIC-seq |
| chrX:139865412:139865472:[+] | chr17:62521887:62521944:[+] | nonBSJ supported | CDS |
circRNA 5':AUCUCAAG----GUCUUCCAGAUAAUCCUGAGCUUCCAGAAAA-UCCA-CAUCUUCCAGACAAUCCA 3' ||:|| |:||| || :||: ||: |||||| |||| ||||| ||| ||| target 3':AAGGGUAAACGACGGAAA-UCCGUUGAACCUUUAAU-UCUUUUCAGGUAGUAGA---UCU---AGG 5' |
-25.00 | 12 | RIC-seq |
| chrX:139865413:139865472:[+] | chr17:62521887:62521944:[+] | nonBSJ supported | CDS |
circRNA 5': UCUCAAG----GUCUUCCAGAUAAUCCUGAGCUUCCAGAAAA-UCCA-CAUCUUCCAGACAAUCCA 3' ||:|| |:||| || :||: ||: |||||| |||| ||||| ||| ||| target 3':AAGGGUAAACGACGGAAA-UCCGUUGAACCUUUAAU-UCUUUUCAGGUAGUAGA---UCU---AGG 5' |
-25.00 | 2 | RIC-seq |
| chrX:139866326:139866361:[+] | chr17:62511998:62512035:[+] | nonBSJ supported | Intron |
circRNA 5':AAAUCCA-GGUCUUCCAGGAAAUCCGUGUCUUC--CAGC 3' ||:||| |||||||| ||:|| | :|||| ||| target 3':CUUGGGUACCAGAAGGAAGCUUGGGGA-GGAAGAAGUCA 5' |
-32.60 | 1 | RIC-seq |