Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866580:139866610:[+] chr14:60864510:60864547:[+] nonBSJ supported Exon

circRNA 5':AGCUA-CGUCUUCCAA-CAAAUCCAUG------UCUUCC 3'


            ||| |||| :||| | ||||||| |||||


target  3':ACGAGAGCAG-GGGUAGGAGUAGGUACCGCUUUAGAAGC 5'

 -26.50 2 RIC-seq
chrX:139866584:139866633:[+] chr14:60864923:60864969:[+] nonBSJ supported Exon

circRNA 5':ACGUCUUCCAACAAAUCCAUGUCUUCCUAUA-UCUCCAGGUC--UUCC-AGCAU 3'


            ||||||| |||: || |||| :|| ||| ::|| |:||


target  3':CGCAGAAGCC------GGUGGAG-AGGAGAACGGAAAACCACCUGGGGCUUGUU 5'

 -28.40 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866580:139866610:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866584:139866633:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC