Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866546:139866579:[+] chrX:100667136:100667178:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUC--CAGAA--------AAUAUAUGUCUUC-CAACUA 3'


            ||| ||:|| |||| ||:| ||| |||| | |||


target  3':AGUGAAGGAGAAGUCUAAGUUCAAGUUGUUUAC-GAAGUGGUGA 5'

 -17.70 21 RIC-seq
chrX:139866555:139866579:[+] chrX:100667136:100667167:[+] nonBSJ supported 3UTR

circRNA 5':CCAGAA--------AAUAUAUGUCUUC-CAACUA 3'


            |||| ||:| ||| |||| | |||


target  3':AGUCUAAGUUCAAGUUGUUUAC-GAAGUGGUGA 5'

 -9.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:100667136:100667167:[+] target - chrX:100667137-100667138 G>C RECA-EU ICGC
chrX:100667136:100667178:[+] target - chrX:100667137-100667138 G>C RECA-EU ICGC
chrX:100667136:100667178:[+] target - chrX:100667177-100667178 G>T LICA-CN ICGC