Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865503:139865549:[+] chr10:102121975:102122011:[+] nonBSJ supported Exon

circRNA 5':AGCUCCAAG-UCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUU 3'


            |||| :|||| |||||:|:: |||| |||


target  3': UGAGUCAUUGGAAG-------AGUUCGGGGAC-CGUUGCACA-AGA 5'

 -19.10 8 RIC-seq
chrX:139865542:139865566:[+] chr10:102122270:102122293:[+] nonBSJ supported Exon

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCU 3'


            ||| ||||||


target  3':AGUCCCUUCUCUUUCUA-GACCAGU 5'

 -10.70 16 RIC-seq
chrX:139865988:139866019:[+] chr10:102121555:102121592:[+] nonBSJ supported Exon

circRNA 5':AUGUCUU--CCAGU------AACCUCCCAGUCUUCCAGAA 3'


            ||| |||:| ||| ||||: |||| |||


target  3':GACAAAAAUGGUUAAGACCUUUGU-GGGUU-GAAGUUCUG 5'

 -17.50 7 RIC-seq
chrX:139865988:139866021:[+] chr10:102121645:102121672:[+] nonBSJ supported Exon

circRNA 5': AUGUCUUCCAGUAACCUCCCAGUCUUCCAGAAAA 3'


            ||:||:| || ||| ||||||


target  3':UUAUAGGACUUCUACC----GUCUC---GUCUUUC 5'

 -8.70 1 RIC-seq
chrX:139866011:139866032:[+] chr10:102121825:102121843:[+] nonBSJ supported Exon

circRNA 5':CUUCCAGAAAAUCCACGUCUUC 3'


            |||||:| |||| | ||||


target  3':AAAGGUUUG-UAGG-G-AGAAA 5'

 -14.60 6 RIC-seq
chrX:139866254:139866296:[+] chr10:102123294:102123332:[+] nonBSJ supported Exon

circRNA 5':AAAGCCAU-GUCUUCCAGACUAUCCAUGUCUUCC-AGAAAAUCCU 3'


            |||| :||| |||: ||| ||||| ||


target  3':GUUCGUCCGUAGACUA-CUGG-----ACACCUUAAUCUUUAUGGU 5'

 -12.50 1 RIC-seq
chrX:139866254:139866315:[+] chr10:102123280:102123332:[+] nonBSJ supported Exon

circRNA 5':AAAGCCAU-GUCUUCCAGACUAUCCAUGUCUUCC-AGAAAAUCCUUGUCUUCCCUCAAAUCCAU 3'


            |||| :||| |||: ||| ||||| || |: || ||||


target  3':GUUCGUCCGUAGACUA-CUGG-----ACACCUUAAUCUUUAUGGU-CGUCU----GUAAAGGUU 5'

 -14.70 1 RIC-seq
chrX:139866254:139866335:[+] chr10:102123278:102123332:[+] nonBSJ supported Exon

circRNA 5':AAAGCCAU-GUCUUCCAGACUAUCCAUGUCUUCC-AGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


            |||| :||| |||: ||| ||||| || ||| || ||||:|


target  3':GUUCGUCCGUAGACUA-CUGG-----ACACCUUAAUCUUUAUGG--------------------UCGU---CUGUAAAGGUUCC 5'

 -17.80 19 RIC-seq
chrX:139866256:139866279:[+] chr10:102123280:102123316:[+] nonBSJ supported Exon

circRNA 5':AGCCAUGU-------------CUUCCAGACUA-UCCAU 3'


            ||| ||| |: ||||| ||||


target  3':CUGG-ACACCUUAAUCUUUAUGGUCGUCUGUAAAGGUU 5'

 -12.90 2 RIC-seq
chrX:139866278:139866324:[+] chr10:102123279:102123336:[+] nonBSJ supported Exon

circRNA 5':AUGUCUUCCAGAAAAUC------CUUGUCUUCCCUCAAAU-CCA-UAG-C--UUCCGA 3'


            |:|| ||| ||| |:||| |||| ||| :|| | ||||:|


target  3':AAUAGUUCGUCCG-UAGACUACUGGACACCUUAAUCUUUAUGGUCGUCUGUAAAGGUUC 5'

 -16.10 1 RIC-seq
chrX:139866278:139866325:[+] chr10:102123279:102123336:[+] nonBSJ supported Exon

circRNA 5':AUGUCUUCCAGAAAAUC------CUUGUCUUCCCUCAAAU-CCA-UAG-C--UUCCGAA 3'


            |:|| ||| ||| |:||| |||| ||| :|| | ||||:|


target  3':AAUAGUUCGUCCG-UAGACUACUGGACACCUUAAUCUUUAUGGUCGUCUGUAAAGGUUC 5'

 -17.00 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866254:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866278:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866278:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC