Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866240:139866251:[+] chr14:104120936:104120951:[+] nonBSJ supported CDS

circRNA 5': CC-AC--GUCUUCCA 3'


            || || |||||||


target  3':AGGUUGAACAGAAGGA 5'

 -12.80 1 RIC-seq
chrX:139866240:139866251:[+] chr14:104120937:104120951:[+] nonBSJ supported CDS

circRNA 5': CC-AC--GUCUUCCA 3'


            || || |||||||


target  3':AGGUUGAACAGAAGG 5'

 -13.00 1 RIC-seq
chrX:139866366:139866377:[+] chr14:104120936:104120951:[+] nonBSJ supported CDS

circRNA 5': CC-AC--GUCUUCCA 3'


            || || |||||||


target  3':AGGUUGAACAGAAGGA 5'

 -12.80 66 RIC-seq
chrX:139866441:139866449:[+] chr14:104120936:104120944:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCA 3'


            |||||||


target  3':ACAGAAGGA 5'

 -12.20 16 RIC-seq
chrX:139866444:139866467:[+] chr14:104120936:104120953:[+] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGGUACGUCUUCCA 3'


            ||||||| |||||||


target  3':AGAGGUUGAA------CAGAAGGA 5'

 -17.20 53 RIC-seq
chrX:139866459:139866467:[+] chr14:104120936:104120944:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCA 3'


            |||||||


target  3':ACAGAAGGA 5'

 -12.20 16 RIC-seq
chrX:139866495:139866503:[+] chr14:104120936:104120944:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCA 3'


            |||||||


target  3':ACAGAAGGA 5'

 -12.20 17 RIC-seq
chrX:139866615:139866651:[+] chr14:104123895:104123922:[+] nonBSJ supported CDS

circRNA 5':UCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAU 3'


            ||||| |||||| |||| :||


target  3':UGAGGU-------GUCGUAA--GUCCACUAAACUGUU 5'

 -19.00 1 RIC-seq
chrX:139866615:139866664:[+] chr14:104123882:104123922:[+] nonBSJ supported CDS

circRNA 5':UCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUU--CC 3'


            ||||| |||||| |||| :|| || |:|| ||


target  3':UGAGGU-------GUCGUAA--GUCCACUAAACUGUUU-CG-GUAGUAUUGG 5'

 -25.40 1 RIC-seq
chrX:139866615:139866665:[+] chr14:104123882:104123922:[+] nonBSJ supported CDS

circRNA 5':UCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUU--CCA 3'


            ||||| |||||| |||| :|| || |:|| ||


target  3':UGAGGU-------GUCGUAA--GUCCACUAAACUGUUU-CG-GUAGUAUUGG 5'

 -27.10 14 RIC-seq