Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865661:139865682:[+] chr9:119160649:119160673:[-] nonBSJ supported 3UTR

circRNA 5': CAGCUAAUCCAUGUCUU-CC-AGA 3'


            ||||:||: || ||


target  3':UGUCGGUUGUCUUUGUUUUGGAUCG 5'

 -10.60 1 RIC-seq
chrX:139865661:139865694:[+] chr9:119160649:119160674:[-] nonBSJ supported 3UTR

circRNA 5': CAGCUAAUCCAUGUCUUCCAGA---AAAAUCUGUGUC 3'


            ||||:|| |||| ||||:||: |:


target  3':UGUCGGUU-----------GUCUUUGUUUUGGAU-CGU 5'

 -14.50 3 RIC-seq
chrX:139865661:139865694:[+] chr9:119160649:119160676:[-] nonBSJ supported 3UTR

circRNA 5': CAGCUAAUCCAUGUCUUCCAGA---AAAAUCU-GUGUC 3'


            ||||:|| |||| ||||:|| |::|


target  3':UGUCGGUU-----------GUCUUUGUUUUGGAUCGUAU 5'

 -14.60 48 RIC-seq
chrX:139865664:139865693:[+] chr9:119160619:119160646:[-] nonBSJ supported 3UTR

circRNA 5':CUAAUCCAUGUCUUC-CAGAAAAAUCU-GUGU 3'


            ||| || ||| || ||: ||| |||


target  3':CAUUUAGUUCAGUAGAGUUC----AGAUCACU 5'

 -9.30 1 RIC-seq
chrX:139865666:139865694:[+] chr9:119160630:119160674:[-] nonBSJ supported 3UTR

circRNA 5':AAUC-CAUGUCUUC-------------CAGA---AAAAUCUGUGUC 3'


            ||| || |||| |||| ||||:||: |:


target  3':GUAGAGUUCAGAUCACUUCUGUCGGUUGUCUUUGUUUUGGAU-CGU 5'

 -13.20 1 RIC-seq