Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865875:139865903:[+] chr3:10168244:10168270:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGGUCUUCCAGUCAAUCCACAUCUUC 3'


            ||||| ||| |: |||:


target  3':GGGUCC-GAAAACCGACACUUAC-AGAGU 5'

 -11.30 1 RIC-seq
chrX:139865904:139865936:[+] chr3:10168236:10168260:[+] nonBSJ supported 3UTR

circRNA 5':CGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUG 3'


            || ||||: ||||:||


target  3':ACCGACACUUA---CAGAGU-----UUAUGUAA 5'

 -6.20 1 RIC-seq
chrX:139865913:139865941:[+] chr3:10168244:10168270:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGGUCUUCCAGCCAAUAUAUGUCUUC 3'


            ||||| ||| || ||||||:


target  3':GGGUCC-GAAAACCGACACU-UACAGAGU 5'

 -19.40 46 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865875:139865903:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC