Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865381:139865420:[+] chr20:44037507:44037554:[+] nonBSJ supported Exon

circRNA 5':GGGUCUUC-CA--GCGACUUCAAGUCU------UCCAAUAAUCUCAAGG 3'


            |:||||| || ||:| || :||| ||| :|:|||||


target  3': CUAGAAGCGUUCCGUUCUUGUGUAGACGACGUAGGCCCA-GGGGUUCCA 5'

 -25.60 1 RIC-seq
chrX:139865381:139865423:[+] chr20:44037505:44037554:[+] nonBSJ supported Exon

circRNA 5':GGGUCUUC-CA--GCGACUUCAAGUCU------UCCAAUAAUCUCAAGGUCU 3'


            |:||||| || ||:| || :||| ||| :|:|||||||


target  3': CUAGAAGCGUUCCGUUCUUGUGUAGACGACGUAGGCCCA-GGGGUUCCAGU 5'

 -30.90 17 RIC-seq
chrX:139865382:139865423:[+] chr20:44037505:44037553:[+] nonBSJ supported Exon

circRNA 5':GGUCUUC-CA--GCGACUUCAAGUCU------UCCAAUAAUCUCAAGGUCU 3'


            |||||| || ||:| || :||| ||| :|:|||||||


target  3': UAGAAGCGUUCCGUUCUUGUGUAGACGACGUAGGCCCA-GGGGUUCCAGU 5'

 -29.30 1 RIC-seq
chrX:139866292:139866333:[+] chr20:44038698:44038741:[+] nonBSJ supported Exon

circRNA 5':AUCCUUGUCUUCCCUCAAAUCCAUAGCUU--CCGAAAAA--------UCCAG 3'


            ||||: ||||| |||| :|| ||:| ||||


target  3':AAGGAGGAGAAG------UAGGC--UGACACGGUUCCCGCAUAGACGAGGUA 5'

 -22.00 23 RIC-seq
chrX:139866295:139866335:[+] chr20:44038713:44038739:[+] nonBSJ supported Exon

circRNA 5': CUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


            ||: ||||| ||||| |||:|


target  3':GGAGGAGAAGU---------------AGGCUGACACGGUUCC 5'

 -19.50 1 RIC-seq
chrX:139866296:139866336:[+] chr20:44038670:44038710:[+] nonBSJ supported Exon

circRNA 5':UUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUC----CAGGUC 3'


            |:||| ||| ||| :||| |||||


target  3':CAUAGAC--GAGG-UAGUAG-UGAACCUAAACCCGAUACGUCCAA 5'

 -12.50 1 RIC-seq
chrX:139866298:139866335:[+] chr20:44038713:44038740:[+] nonBSJ supported Exon

circRNA 5':GUCUUCC-C-UCAAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


            ||:||| | ||| ||||| |||:|


target  3': AGGAGGAGAAGU-----------AGGCUGACACGGUUCC 5'

 -19.90 19 RIC-seq
chrX:139866298:139866335:[+] chr20:44038713:44038741:[+] nonBSJ supported Exon

circRNA 5':GUCUUCC-C-UCAAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


            ||:||| | ||| ||||| |||:|


target  3':AAGGAGGAGAAGU-----------AGGCUGACACGGUUCC 5'

 -20.50 87 RIC-seq
chrX:139866331:139866338:[+] chr20:44038633:44038641:[+] nonBSJ supported Exon

circRNA 5':CAGGUCUU 3'


            |||||:|


target  3':CUCCAGGAU 5'

 -8.40 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:44038698:44038741:[+] target - chr20:44038711-44038712 G>A LICA-CN ICGC
chrX:139866292:139866333:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866296:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866298:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC