Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865935:139865988:[+] chr12:74933433:74933487:[+] nonBSJ supported 3UTR

circRNA 5':UGUC-UUC-CUGAAGAUCCACGUCUUCCAGAAAA-UCCAUGUCUUCCAGAAAAUCCA 3'


            ||| ||| |||| ||: || ||| ||| || |||| ||||


target  3':CCAGAAAGAGACUGAAGAUUGUUAUUUUCCUGACGAGG-ACAACAGUUCUUCUAGG 5'

 -25.80 1 RIC-seq
chrX:139865935:139865989:[+] chr12:74933431:74933487:[+] nonBSJ supported 3UTR

circRNA 5':UGUC-UUC-CUGAAGAUCCACGUCUUCCAGAAAA-UCCAUGUCUUCCAGAAAAUCCAU 3'


            ||| ||| |||| ||: || ||| ||| || |||| |||||


target  3':CCAGAAAGAGACUGAAGAUUGUUAUUUUCCUGACGAGG-ACAACAGUUCUUCUAGGUU 5'

 -26.50 26 RIC-seq