Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865876:139865909:[+] chr5:165171248:165171285:[+] nonBSJ supported Intron

circRNA 5':CCAGGUCUUCCA--GUCAAUC-CACAU-CUUCC-GGAAA 3'


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target  3':UGUCAAG-AGGUUACAGUGAGAGUGGAUGAAGUAUCUUA 5'

 -22.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC