Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865661:139865694:[+] chr7:148660466:148660499:[+] nonBSJ supported Exon

circRNA 5':CAGCUAAUCCAUGUCUUCCAGAAAAAUC-UGUGUC 3'


            |||:| || ||| |||:|


target  3':UUCGGUCAGUUUAAAUC-GUCACCCCCCAACAUAU 5'

 -8.10 13 RIC-seq
chrX:139865705:139865759:[+] chr7:148660406:148660466:[+] nonBSJ supported Exon

circRNA 5':UCCAAGUCUUC---CAGUAAAUCU----AGUUCU-----UCCAGAAAAAUCUAGAUCUUCCAGUCAA 3'


            |||| | || ||| |||||| :||| ||| || ||||:||


target  3':UGGUUGAAAUCACUGUGAUUACAAUUAUUCAAGACUAUUGGGUGAUGGUAGC-CU----GGUCGGU 5'

 -20.70 23 RIC-seq
chrX:139865741:139865774:[+] chr7:148660408:148660436:[+] nonBSJ supported Exon

circRNA 5':AUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGA 3'


            ||| ||| :||| | |:|| ||||


target  3':AAGA-CUAUUGGGUGA--UGGUAGCCU--GGUCG 5'

 -14.30 1 RIC-seq
chrX:139865771:139865805:[+] chr7:148660477:148660503:[+] nonBSJ supported Exon

circRNA 5':CAGAAAGAAAUCCAGGUCUUCCAGUCAAU-----CAGUGU 3'


            |:|||| |||||||| |||||


target  3':AUUUUUC-------------GGUCAGUUUAAAUCGUCACC 5'

 -15.60 14 RIC-seq
chrX:139866675:139866749:[+] chr7:148660407:148660471:[+] nonBSJ supported Exon

circRNA 5':CGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACU---ACCCAGUCUUCCAUCA-ACUGGCUC 3'


            || |||:| ||| :|| || |||| ||||| | ||||| ||::||:


target  3':ACAUAUGGUUGAAAU--CAC-------UGU-GAU-UACAAUUAUUCAAGACUAUUGGGUGAU--GGUAGCCUGGUCGG 5'

 -29.10 13 RIC-seq
chrX:139866735:139866782:[+] chr7:148660448:148660497:[+] nonBSJ supported Exon

circRNA 5':UCCA-UCAAC--UGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUG-UGCU 3'


            ||| |||| |:|| ||| ||||| |||| ::||


target  3':CGGUCAGUUUAAAUCGUCACCCCCCAACAUAUGGUUGAAA---UCACUGUGAU 5'

 -19.80 11 RIC-seq
chrX:139866742:139866778:[+] chr7:148660407:148660435:[+] nonBSJ supported Exon

circRNA 5':ACUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUG 3'


            |||: |:|||: ||| || ||||:


target  3':AGACUAU----UGGGUGAU---GGUAGCCU-GGUCGG 5'

 -18.50 10 RIC-seq
chrX:139866743:139866778:[+] chr7:148660407:148660435:[+] nonBSJ supported Exon

circRNA 5': CUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUG 3'


            |||: |:|||: ||| || ||||:


target  3':AGACUAU----UGGGUGAU---GGUAGCCU-GGUCGG 5'

 -18.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:148660448:148660497:[+] target - chr7:148660496-148660497 G>T RECA-EU ICGC
chr7:148660448:148660497:[+] target - chr7:148660497-148660498 C>G PACA-CA ICGC
chr7:148660466:148660499:[+] target - chr7:148660496-148660497 G>T RECA-EU ICGC
chr7:148660466:148660499:[+] target - chr7:148660497-148660498 C>G PACA-CA ICGC
chr7:148660477:148660503:[+] target - chr7:148660496-148660497 G>T RECA-EU ICGC
chr7:148660477:148660503:[+] target - chr7:148660497-148660498 C>G PACA-CA ICGC