Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865429:139865445:[+] chr11:65270774:65270790:[+] nonBSJ supported Exon

circRNA 5':AUAAUCCUGAGCUUCCA 3'


            |||||||||: |:||


target  3':AGUUAGGACUUUAGGGG 5'

 -17.20 2 RIC-seq
chrX:139865443:139865456:[+] chr11:65268599:65268617:[+] nonBSJ supported Exon

circRNA 5':CCAGAAAAUC----CACA 3'


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target  3':UGUCCAGUAGAUAAGUGUU 5'

 -5.40 1 RIC-seq
chrX:139865560:139865594:[+] chr11:65271220:65271257:[+] nonBSJ supported Exon

circRNA 5':CUGGUCUUCCAC-CAAAUCCAGAUCU--UCCAGGAAAA 3'


            || |||||| | ||||||| ||||| |||| |||


target  3':AGCAAGAAGGCGAGUUUAGGACUAGACCAGGUAAUUUC 5'

 -31.10 2 RIC-seq
chrX:139866329:139866359:[+] chr11:65271248:65271275:[+] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGGAA-AUCCGUGUCUUCCA 3'


            || |:||| || || ||| ||||||


target  3': GGA-CGGAAUUUCAAUGUAAGCA-AGAAGG 5'

 -17.80 2 RIC-seq
chrX:139866353:139866376:[+] chr11:65267118:65267145:[+] nonBSJ supported Exon

circRNA 5': UCUUCCAGCAAAUCCACGU----CUUCC 3'


            |||||||| ||||| ||||


target  3':CAGAAGGUCAAA-AGGUGAAGUUUGAAGA 5'

 -21.10 1 RIC-seq
chrX:139866584:139866633:[+] chr11:65271205:65271257:[+] nonBSJ supported Exon

circRNA 5':ACG-UCUUCCAA-CAAAUCCAUGUCU--UCCUAUAUCUCCAGGUCUUC-CAG-CAU 3'


            || |||||| ||||||| :||| ||| :|| ||| ||| ||


target  3':AGCAAGAAGGCGAGUUUAGGACUAGACCAGGUAAUUUC---UCACAAGCGUCUGUU 5'

 -29.20 2 RIC-seq
chrX:139866599:139866638:[+] chr11:65272445:65272492:[+] nonBSJ supported Exon

circRNA 5':UCCAUGUCUUCCUAUAUC--UCCA--GGUCUUC-CAGCAU----CUCCA 3'


            || ||| ||||| |||| ||| ||:| ||||


target  3':UGG-ACAAAAGGAGUAAAACAGGUGACCACUUAAGUUGACCUUCGAGGA 5'

 -20.90 2 RIC-seq
chrX:139866620:139866640:[+] chr11:65268893:65268918:[+] nonBSJ supported Exon

circRNA 5':AGGU--CUUCCAGCA---UCUCCAGG 3'


            ||| || ||||| ||||||:


target  3':CUCAUUGAUGGUCGGUAAAGAGGUUA 5'

 -17.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:65268893:65268918:[+] target - chr11:65268915-65268916 A>G PACA-CA ICGC
chr11:65271205:65271257:[+] target - chr11:65271241-65271242 T>G EOPC-DE ICGC
chr11:65271220:65271257:[+] target - chr11:65271241-65271242 T>G EOPC-DE ICGC
chrX:139866584:139866633:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC