Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866227:139866254:[+] chr5:87678979:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGCAAGUCCACGUCUUCCAACA 3'


            |||| |||| ||| ||| ||||||


target  3':UGAAGAGUCGGU--GGUACAG-AGGUUGA 5'

 -26.80 1 RIC-seq
chrX:139866263:139866289:[+] chr5:87678980:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGA 3'


            |||| ||| |:| ||||||| ||||:


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUUG 5'

 -27.00 2 RIC-seq
chrX:139866263:139866308:[+] chr5:87678971:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCA 3'


            |||| ||| |:| ||||||| ||||: |||| |||


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUU-----------GAAGUAAGUU 5'

 -28.90 1 RIC-seq
chrX:139866263:139866309:[+] chr5:87678970:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAA 3'


            |||| ||| |:| ||||||| ||||: |||| ||||


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUU-----------GAAGUAAGUUU 5'

 -29.80 1 RIC-seq
chrX:139866263:139866310:[+] chr5:87678969:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAA 3'


            |||| ||| |:| ||||||| ||||: |||| |||||


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUU-----------GAAGUAAGUUUA 5'

 -30.80 1 RIC-seq
chrX:139866263:139866312:[+] chr5:87678968:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUC 3'


            |||| ||| |:| ||||||| ||||: |||| ||||||


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUU-----------GAAGUAAGUUUAA 5'

 -32.30 17 RIC-seq
chrX:139866263:139866312:[+] chr5:87678969:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUC 3'


            |||| ||| |:| ||||||| ||||: |||| ||||||


target  3':UGAAGAGUC-GGU-GGUACAG-AGGUU-----------GAAGUAAGUUUA 5'

 -31.70 1 RIC-seq
chrX:139866353:139866403:[+] chr5:87678967:87679004:[+] nonBSJ supported Exon

circRNA 5':UCUUC-CAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUA 3'


            |||| |||| ||| ||| |||||| ||| |||||||


target  3':UGAAGAGUCGGU--GGUACAG-AGGUUG-----------AAGUAAGUUUAAC 5'

 -29.60 2 RIC-seq