Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865582:139865620:[+] chr1:161254814:161254843:[+] nonBSJ supported 3UTR

circRNA 5':UCUUCCA-GGAAAAUCCACGUCUUC-CAGGAAAUCCAUGUC 3'


            ||||| |||| :||| | ||| ||||:


target  3': GAAGGAACCUUGAU----UAGAUGAGUC------GUACGU 5'

 -15.30 1 RIC-seq
chrX:139865583:139865620:[+] chr1:161254814:161254842:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCA-GGAAAAUCCACGUCUUC-CAGGAAAUCCAUGUC 3'


            |||| |||| :||| | ||| ||||:


target  3': AAGGAACCUUGAU----UAGAUGAGUC------GUACGU 5'

 -12.70 1 RIC-seq
chrX:139865583:139865665:[+] chr1:161254818:161254871:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUC-CAGCU 3'


            |||| || |||| | |||| ||||:|| |||| || :|||| | ||||


target  3':AAAGGAACUGU-----------GGUCGUA-AGGU-CAGAGGG---------------AAGGAACCU--UGAUUAGAUGAGUCGU 5'

 -34.80 2 RIC-seq