Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865989:139866044:[+] chr4:110278258:110278309:[-] nonBSJ supported Exon

circRNA 5':UGUCUUC-CAGUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCC-CAACAAUCCAA 3'


            |||||| ||:| |||| || ||| ||| |: ||| |||| ||||


target  3':CCAGAAGAGUUAACGUCCAGUCAUA--GUAAUUU-GGUUCGU-AGGAGUUG--AGGUC 5'

 -29.10 1 RIC-seq
chrX:139865993:139866044:[+] chr4:110278263:110278309:[-] nonBSJ supported Exon

circRNA 5':UUC-CAGUAACCUCCCAGUCUUCCAGAAAAUCCACGUCUUCC-CAACAAUCCAA 3'


            || ||:| |||| || ||| ||| |: ||| |||| ||||


target  3': AGAGUUAACGUCCAGUCAUA--GUAAUUU-GGUUCGU-AGGAGUUG--AGGUC 5'

 -20.40 1 RIC-seq