Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866137:139866178:[+] chr5:87583256:87583299:[+] nonBSJ supported Exon

circRNA 5':UCUUCCA-------GACUA-UCCA-UGUCUUCCAGAAAAUCCUUGUCUUCC 3'


            |:|||| :|||| ||| : ||||| ||| |||||||


target  3':CGGAGGUGCCAGUGUUGAUGAGGGAGGAGAAG-------AGGUACAGAAGA 5'

 -30.70 2 RIC-seq
chrX:139866204:139866234:[+] chr5:87581610:87581645:[+] nonBSJ supported Exon

circRNA 5':CCGGG-----UCUUCCAGGAAAUCCGUGUCUUCCAG 3'


            ||| |||:|||:| || || ||||||


target  3':CGCCAACGAAAGAGGGUUCCAAAGACAGUGAAGGUU 5'

 -23.70 2 RIC-seq
chrX:139866264:139866304:[+] chr5:87583256:87583299:[+] nonBSJ supported Exon

circRNA 5': CUUCCA-------GACUA-UCCA-UGUCUUCCAGAAAAUCCUUGUCUUCC 3'


            |:|||| :|||| ||| : ||||| ||| |||||||


target  3':CGGAGGUGCCAGUGUUGAUGAGGGAGGAGAAG-------AGGUACAGAAGA 5'

 -30.60 2 RIC-seq