Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866043:139866088:[+] chr5:127292499:127292543:[-] nonBSJ supported Exon

circRNA 5':AAGUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUA-CGUCU---UCCA 3'


            |||| ||:| : |:|:|:| |||| ||: :||


target  3':AUCAG--GGUC-GAUGAGCUCUCC--GACUCCGUCUUAGCGAACUUGGGC 5'

 -18.20 17 RIC-seq
chrX:139866583:139866588:[+] chr5:127357474:127357479:[-] nonBSJ supported Exon

circRNA 5':UACGUC 3'


           |||:|


target  3':AUGUAU 5'

 -1.70 1 RIC-seq
chrX:139866600:139866606:[+] chr5:127357475:127357481:[-] nonBSJ supported Exon

circRNA 5':CCAUGUC 3'


            |||:|


target  3':UGUAUAC 5'

 -2.60 2 RIC-seq
chrX:139866647:139866654:[+] chr5:127357474:127357482:[-] nonBSJ supported Exon

circRNA 5':AGCAUCUG 3'


            |||| ||


target  3':AUGUAUACU 5'

 -2.40 1 RIC-seq
chrX:139866647:139866655:[+] chr5:127357474:127357482:[-] nonBSJ supported Exon

circRNA 5':AGCAUCUGC 3'


            |||| ||


target  3':AUGUAUACU 5'

 -2.80 1 RIC-seq
chrX:139866683:139866696:[+] chr5:127357474:127357489:[-] nonBSJ supported Exon

circRNA 5':AGCAUCUCU--GUGUC 3'


            |||| :|||


target  3':AUGUAUACUAUUACAA 5'

 -3.50 19 RIC-seq