Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866617:139866658:[+] chr11:46450296:46450346:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGCAUCUCC------AGGG--CUUC--CAGCAUCUGCUCG 3'


            |||||| ||||| |||| ||| ||: |||| ||: |||


target  3':UGGUCCACCGUGUCGU-GAGGCAGACAUCCAUAGAGACAGUCGAAGGGGAGA 5'

 -39.30 9 RIC-seq
chrX:139866617:139866661:[+] chr11:46450296:46450335:[-] nonBSJ supported Exon

circRNA 5':UCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCU 3'


            |||||| ||||| |||| || |||| || |||


target  3':UGGUCCACCGUGUCGU-GAGGCA--GACAUCCAUAGA-GA-CAGU 5'

 -28.50 1 RIC-seq