Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866093:139866099:[+] chr7:94296259:94296265:[+] nonBSJ supported 3UTR

circRNA 5':AGCCAUG 3'


            |||||


target  3':AUGGUAG 5'

 -6.10 15 RIC-seq
chrX:139866743:139866791:[+] chr7:94294718:94294778:[+] nonBSJ supported 3UTR

circRNA 5':CUGGCUCAAUAUCCA-------------UGUCUUCCA---ACGUCUCCA-GUGUGC-UGAUCUUCUG 3'


            ||| |||||| :| ||| |||| ||| |||||| || ||||||


target  3':AACC-----AUAGGUCCAUAAACUCCAUGCUUAAGUCACAUGCAACGGUCCACACGAACCAGAAGA 5'

 -30.80 13 RIC-seq
chrX:139866743:139866792:[+] chr7:94294717:94294778:[+] nonBSJ supported 3UTR

circRNA 5':CUGGCUCAAUAUCCA-------------UGUCUUCCA---ACGUCUCCA-GUGUGC-UGAUCUUCUGA 3'


            ||| |||||| :| ||| |||| ||| |||||| || ||||||:


target  3':AACC-----AUAGGUCCAUAAACUCCAUGCUUAAGUCACAUGCAACGGUCCACACGAACCAGAAGAU 5'

 -31.90 14 RIC-seq
chrX:139866743:139866793:[+] chr7:94294715:94294778:[+] nonBSJ supported 3UTR

circRNA 5':CUGGCUCAAUAUCCA-------------UGUCUUCCA---ACGUCUCCA-GUGUGC-UGAUCUUCUGAC 3'


            ||| |||||| :| ||| |||| ||| |||||| || ||||||:|


target  3':AACC-----AUAGGUCCAUAAACUCCAUGCUUAAGUCACAUGCAACGGUCCACACGAACCAGAAGAUUU 5'

 -33.10 1 RIC-seq
chrX:139866743:139866806:[+] chr7:94294719:94294778:[+] nonBSJ supported 3UTR

circRNA 5':CUGGCUCAAUAUCCA-------------UGUCUUCCA---ACGUCUCCA-GUGUGCUGAUCUUCUGACAUUCAGGUCUUCC 3'


            ||| |||||| :| ||| |||| ||| ||||||| |||||||


target  3':AACC-----AUAGGUCCAUAAACUCCAUGCUUAAGUCACAUGCAACGGUCCACACGAA---------------CCAGAAG 5'

 -30.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866743:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866743:139866806:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC