5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865419:139865478:[+] | chr7:94298678:94298745:[+] | nonBSJ supported | 3UTR |
circRNA 5':GGUCUUCCAGA------------UAAUC-C---UGAGCUUCCAGAAAAUCCACAUCUUCCAGACA-------AUCCAUGUCUU 3' |||:|| ||||| | |||:||| |||:||| |||||||||: target 3': UAGGAGAUAAUUUAAUAAUUAGAUUAGUGGAAACUUGAA--------------AGAGGGUGACCCCAAAAAUAGGUACAGGU 5' |
-29.70 | 1 | RIC-seq |
| chrX:139865474:139865535:[+] | chr7:94298638:94298707:[+] | nonBSJ supported | 3UTR |
circRNA 5':GUCUUCC-----GGACA--AUCCAUGUCUUCCAAGAAGCUCCAA--------GUCUUCCAGUAAAUCAAGUCUUCCA 3' |||:|| || ||||||| ||||| |||| || ||||:|| |:| || |:||| target 3':AAGAGGGUGACCCCAAAAAUAGGUAC---AGGUUAAGCGAGAUUUAUUCAACCAGAGGGACGUCAAG----GGAGGC 5' |
-42.20 | 2 | RIC-seq |
| chrX:139865651:139865699:[+] | chr7:94295418:94295492:[+] | nonBSJ supported | 3UTR |
circRNA 5':ACAGAUCUUCCAGCU--------------------AAUC-----------CAUGUCUUCCAGAAAAAUCUGUGUCUUCCA 3' ||| ||:||||| ||:| ||||||:||| ||: :||||:|| target 3':AGUC-AGGAGGUCACUAAAUUUUUCUCCCAUGGCUUUGGCGUUCUUUUCAGUACAGGAGGAGG----AGGAGCAGAGGGG 5' |
-38.70 | 2 | RIC-seq |
| chrX:139865688:139865700:[+] | chr7:94298807:94298818:[+] | nonBSJ supported | 3UTR |
circRNA 5':CUGUGUCUUCCAC 3' |:|: |||||| target 3':AAUAUUGAAGGU 5' |
-9.10 | 2 | RIC-seq |
| chrX:139865759:139865787:[+] | chr7:94298848:94298878:[+] | nonBSJ supported | 3UTR |
circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUC--CAGGU 3' |||||| || | |: |||| target 3':AAGUCACCAUCCUCCUCCCGAUGACUGUCCC 5' |
-11.00 | 1 | RIC-seq |
| chrX:139865798:139865826:[+] | chr7:94298848:94298878:[+] | nonBSJ supported | 3UTR |
circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUC--CAGGU 3' |||||| || | |: |||| target 3':AAGUCACCAUCCUCCUCCCGAUGACUGUCCC 5' |
-11.00 | 1 | RIC-seq |
| chrX:139865801:139865833:[+] | chr7:94295128:94295159:[+] | nonBSJ supported | 3UTR |
circRNA 5':AGUGUCU-UCCAGAAAGAAAUCCAGGUCUUCCAG 3' |||:| |||||| | :|| :|||||| target 3':ACACGGUCAGGUCUCACC--GGGAUUGGAAGGUA 5' |
-25.70 | 2 | RIC-seq |
| chrX:139865856:139865868:[+] | chr7:94296221:94296233:[+] | nonBSJ supported | 3UTR |
circRNA 5':AUCUACGUCUUCC 3' ||:||:||:|| target 3':CAGGUGUAGGAGU 5' |
-14.80 | 1 | RIC-seq |
| chrX:139865925:139865961:[+] | chr7:94297915:94297948:[+] | nonBSJ supported | 3UTR |
circRNA 5':AGCCAAUAUAUGUCUUC-CUGAAGAUCCACGUCUUCCA 3' ||| || ||| | || ||||| |||||| target 3':ACGGAUAGUUACCCUCGAGAA-UCUAGA---AGAAGGA 5' |
-19.00 | 1 | RIC-seq |
| chrX:139865957:139865997:[+] | chr7:94297915:94297958:[+] | nonBSJ supported | 3UTR |
circRNA 5': UUCCAGAAAAUCCAUGUCUUCC--AGAAAAUCCAUG-UCUUCCA 3' ||| || || |:|| || |||||| target 3':AGAGAUCCGAACGG-AUAGUUACCCUCGAGAAUCUAGAAGAAGGA 5' |
-11.90 | 1 | RIC-seq |
| chrX:139866174:139866216:[+] | chr7:94298274:94298314:[+] | nonBSJ supported | 3UTR |
circRNA 5':CUUCCCUUAAAUCUAUAGCU-UCCAAAAAA-UCCGGGUC-UUCCAG 3' ||||| ||| |||| :||:|||| |||||| target 3':CAAGGGCGUCC------CGAGAGGUAAAGACGGGUCCAGAAAGGUCG 5' |
-31.30 | 2 | RIC-seq |
| chrX:139866184:139866241:[+] | chr7:94298622:94298682:[+] | nonBSJ supported | 3UTR |
circRNA 5':AUCUAUA--GCUUCCAAAAAAUCCGGGUCUUCC---AGGAAA-UCCGUGUCUUCCAGCAAGUCC 3' ||:| |||: ||| |||||:|| || |||| || | ||:|| target 3':CAGGUUAAGCGAGA--UUUAUUCAACCAGAGGGACGUCAAGGGAGGCUCAAAUAAAC-UUUAGA 5' |
-26.20 | 1 | RIC-seq |
| chrX:139866327:139866358:[+] | chr7:94296131:94296154:[+] | nonBSJ supported | 3UTR |
circRNA 5':AAUCCAGGU-CUUCCAGGAAAUCCGUGUCUUCC 3' ||| ||| || ||||| |||:| target 3': UAGACCCACGA------UUUAGUAA-AGAGG 5' |
-9.70 | 1 | RIC-seq |
| chrX:139866330:139866343:[+] | chr7:94295301:94295315:[+] | nonBSJ supported | 3UTR |
circRNA 5':CCAGGUCU--UCCAGG 3' ||||| :|||| target 3':CGUCCAUUUUGGGUC 5' |
-12.60 | 2 | RIC-seq |
| chrX:139866403:139866432:[+] | chr7:94295830:94295874:[+] | nonBSJ supported | 3UTR |
circRNA 5': AAUGUCUUCCAGC-------CUACUUGU-GUCUU------CCAA 3' ||::||| ||:| |:||: || :|||: ||| target 3':CUUGUAGAUUGUUGCGACCUCGGUGGUCAUUAGAGACCAAUGGUC 5' |
-16.90 | 2 | RIC-seq |
| chrX:139866531:139866549:[+] | chr7:94298143:94298162:[+] | nonBSJ supported | 3UTR |
circRNA 5':UGUCUUCCAGAAAAU-CCAC 3' | ||||||| ||| target 3':UCUUAAGGUCUGACGUGGUA 5' |
-12.60 | 1 | RIC-seq |
| chrX:139866567:139866593:[+] | chr7:94294835:94294861:[+] | nonBSJ supported | 3UTR |
circRNA 5':UGUCUUCCAACUAAG-CUACGUCUUCCA 3' ||||||| | || ||||:: | target 3':CUAGAAGGAACAGGCAGA-GCAGGGUGA 5' |
-16.90 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr7:94295418:94295492:[+] | target | - | chr7:94295483-94295484 | G>T | LICA-CN | ICGC |
| chrX:139866567:139866593:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |