Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866529:139866537:[+] chrX:148582562:148582570:[-] nonBSJ supported 5UTR

circRNA 5':CAUGUCUUC 3'


            ||:||::


target  3':CUAUAGGGA 5'

 -4.70 11 RIC-seq
chrX:139866602:139866643:[+] chrX:148579763:148579796:[-] nonBSJ supported 5UTR

circRNA 5':AUGUCUUCCUAUAUCUCCAGGUCU-UCCAGCAUCUCC--AGGGCU 3'


            ||:|:|| || |||||||: ||| |||||


target  3': ACGGGAGC----------CCUUGUAGGUCGUGUAGGUGUCCCGU 5'

 -32.90 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:148579763:148579796:[-] target 3255767 chrX:148579780-148579781 AGCACATCCACAGG>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579763:148579796:[-] target 3255765 chrX:148579781-148579782 G>GCACATCCACAGGGCAA Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579763:148579796:[-] target 3255769 chrX:148579786-148579787 T>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579763:148579796:[-] target 3255768 chrX:148579786-148579787 TC>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579763:148579796:[-] target 3255766 chrX:148579794-148579795 G>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579763:148579796:[-] target 2737389 chrX:148579795-148579796 C>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255722 chrX:148582562-148582563 G>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 221208 chrX:148582562-148582563 G>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255721 chrX:148582565-148582566 AT>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255720 chrX:148582566-148582567 TC>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255719 chrX:148582566-148582567 T>TC Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255716 chrX:148582568-148582569 C>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 3255718 chrX:148582569-148582570 C>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148582562:148582570:[-] target 527324 chrX:148582569-148582570 C>T Mucopolysaccharidosis,_MPS-II ClinVar