Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866572:139866593:[+] chr17:49238525:49238553:[+] nonBSJ supported CDS

circRNA 5': UCCAACUAAGCUACGU------CUUCCA 3'


            ||| || :|:||:| |:|||


target  3':CGGGCAGAAGUGGUGUAAGUCGGGGAGGG 5'

 -16.30 28 RIC-seq
chrX:139866575:139866592:[+] chr17:49238543:49238559:[+] nonBSJ supported CDS

circRNA 5':AACUAAGCUACGUCUUCC 3'


            ||| ||: |||||||


target  3':CUGAGCCGG-GCAGAAGU 5'

 -15.80 2 RIC-seq
chrX:139866644:139866663:[+] chr17:49237423:49237444:[+] nonBSJ supported CDS

circRNA 5':UCCA--GCAUCUGCUCGUCUUC 3'


            ||| ||| ||:|: |:|:|


target  3':UGGUACCGUUGAUGGCCGGGAC 5'

 -16.20 30 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866572:139866593:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866575:139866592:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC