Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865418:139865457:[+] chrX:100057296:100057361:[+] nonBSJ supported Exon

circRNA 5': AGGUCUUC-------------------CAGAUAAUCCUGAGCUUCCAGAAAA-------UCCACAU 3'


            |||||||| ||| |||| | ||| ||||||


target  3':UUCCAGAAGACCAUGUUCACCACAUUCUGUCGUACAUUUCUCGCA-GUCAUCAGACAAUAAGGUGUU 5'

 -23.20 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:100057296:100057361:[+] target - chrX:100057318-100057319 C>A LAML-KR ICGC
chrX:100057296:100057361:[+] target - chrX:100057329-100057330 T>C LAML-KR ICGC
chrX:100057296:100057361:[+] target - chrX:100057343-100057344 A>G LAML-KR ICGC