Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865881:139865908:[+] chr10:98510454:98510489:[+] nonBSJ supported Exon

circRNA 5':UCUUCCAGUCAAU--------CCACAUCUUCCGGAA 3'


            |||||||:|||: ||| ::||:||


target  3':UGAAGGUCGGUUGGAGCACUCGGUCCGCGGGGUCUA 5'

 -25.90 1 RIC-seq
chrX:139865881:139865916:[+] chr10:98510456:98510489:[+] nonBSJ supported Exon

circRNA 5':UCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCA 3'


            |||||||:|||:| ||:| :|||


target  3':UGAAGGUCGGUUGGAGCACUC-GGUCCGCG--GGGUC 5'

 -25.80 34 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865881:139865908:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865881:139865916:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC