Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866382:139866442:[+] chr13:90823315:90823373:[+] nonBSJ supported Exon

circRNA 5':AGCCAUGUCUUCCAUCAAAUUAAUGUCU-UCCAGCCUACUUGUGUC-UUCCAACAAAGGUACG 3'


            ||||: ||||| ||| |:|| |||| ||| || ||||||| ||:||


target  3':CUGGUGAACCAGGUAAUUUCA--AUAGUUAGGUAGGACCUUUCAAGAAAGGUUGA--CCGUGG 5'

 -38.80 15 RIC-seq
chrX:139866399:139866442:[+] chr13:90823315:90823361:[+] nonBSJ supported Exon

circRNA 5':AAUUAA---UGUCU-UCCAGCCUACUUGUGUC-UUCCAACAAAGGUACG 3'


            ||||| |:|| |||| ||| || ||||||| ||:||


target  3':GUAAUUUCAAUAGUUAGGUAGGACCUUUCAAGAAAGGUUGA--CCGUGG 5'

 -28.40 1 RIC-seq
chrX:139866405:139866442:[+] chr13:90823315:90823351:[+] nonBSJ supported Exon

circRNA 5':UGUCU-UCCAGCCUACUUGUGUC-UUCCAACAAAGGUACG 3'


            ||| |||| ||| || ||||||| ||:||


target  3': UAGUUAGGUAGGACCUUUCAAGAAAGGUUGA--CCGUGG 5'

 -26.50 2 RIC-seq