Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866766:139866815:[+] chr10:43015417:43015462:[-] nonBSJ supported Exon

circRNA 5':AACGUCUCC-AGUGUGCUGAUCUUCUGACAUUCAGGUCUUC-CAG-UG-UCUGC 3'


            ||:||: || || ||::||| |||||| ||| || ||||


target  3':AUGUAGGUUUUC-CAAAG--AGGGGACACA-----CAGAAGAGUCUACAAGACA 5'

 -29.00 1 RIC-seq
chrX:139866769:139866801:[+] chr10:43015431:43015456:[-] nonBSJ supported Exon

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGU 3'


            ||||| |||| || ||||| ||||:|


target  3':AAGAGGGGACAC-AC-AGAAG------AGUCUAC 5'

 -23.30 1 RIC-seq
chrX:139866769:139866815:[+] chr10:43015431:43015470:[-] nonBSJ supported Exon

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGU--CUGC 3'


            ||||| |||| || ||||| ||||:| ||| ||| |||


target  3':AAGAGGGGACAC-AC-AGAAG------AGUCUACAAGA-CACUUUGACA 5'

 -29.90 4 RIC-seq
chrX:139866769:139866825:[+] chr10:43015431:43015479:[-] nonBSJ supported Exon

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGU--CUGCAAUAUCCAGG 3'


            ||||| |||| || ||||| ||||:| ||| ||| ||| |||


target  3':AAGAGGGGACAC-AC-AGAAG------AGUCUACAAGA-CACUUUGACAUCAUC-GUCG 5'

 -31.00 21 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866766:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866769:139866801:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866769:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866769:139866825:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC