Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865746:139865765:[+] chr7:66019592:66019612:[-] nonBSJ supported Exon

circRNA 5':GAUCU--UCCAGUCAAUCAGUG 3'


            |||: ||||||| ||||||


target  3':GUAGGAGAGGUCAG-UAGUCAG 5'

 -21.80 1 RIC-seq
chrX:139865746:139865776:[+] chr7:66019592:66019629:[-] nonBSJ supported Exon

circRNA 5':GAUCU--UCCAGUCAAUCAGU-GUCUUC-----CAGAAA 3'


            |||: ||||||| |||||| | ||| |||||


target  3':GUAGGAGAGGUCAG-UAGUCAGCCGAACCUAACGUCUUC 5'

 -24.10 4 RIC-seq
chrX:139865746:139865787:[+] chr7:66019592:66019635:[-] nonBSJ supported Exon

circRNA 5':GAUCU--UCCAGUCAAUCAGU-GUCUUCCAGAA-AGAAAUCCAGGU 3'


            |||: ||||||| |||||| | ||| |||| || ||


target  3':GUAGGAGAGGUCAG-UAGUCAGCCGAACCUAACGUCUUC--GUGCAC 5'

 -26.00 29 RIC-seq