5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866499:139866558:[+] | chr9:69112842:69112892:[-] | nonBSJ supported | Exon |
circRNA 5':UUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGU-------------CUUCCAGAAAAUCCACGU-CUUCCAG 3' ||||| ||||||: |:||| |||:|| || |::||| target 3':CAGGUCC---------------------CGGUACGACCAACCGUAUGAGGAGGG--UUUGGGCGCCUGGGGGUA 5' |
-32.90 | 9 | RIC-seq |
| chrX:139866514:139866558:[+] | chr9:69112841:69112892:[-] | nonBSJ supported | Exon |
circRNA 5': GUCUUCCAACCAAGC-------CAUG-UCUUCCAGAAAAUCCACGU-CUUCCAG 3' |||: ||| || |||: ||:||| |||:|| || |::||| target 3':ACAGGUCCC-GGUACGACCAACCGUAUGAGGAGGG--UUUGGGCGCCUGGGGGUA 5' |
-32.90 | 13 | RIC-seq |
| chrX:139866522:139866558:[+] | chr9:69112843:69112892:[-] | nonBSJ supported | Exon |
circRNA 5':ACCAA-GCCAUGU-------------CUUCCAGAAAAUCCACGU-CUUCCAG 3' ||| ||||||: |:||| |||:|| || |::||| target 3':AGGUCCCGGUACGACCAACCGUAUGAGGAGGG--UUUGGGCGCCUGGGGGUA 5' |
-32.70 | 1 | RIC-seq |
| chrX:139866522:139866558:[+] | chr9:69112844:69112892:[-] | nonBSJ supported | Exon |
circRNA 5':ACCAA-GCCAUGU-------------CUUCCAGAAAAUCCACGU-CUUCCAG 3' ||| ||||||: |:||| |||:|| || |::||| target 3': GGUCCCGGUACGACCAACCGUAUGAGGAGGG--UUUGGGCGCCUGGGGGUA 5' |
-32.10 | 1 | RIC-seq |
| chrX:139866543:139866554:[+] | chr9:69112884:69112895:[-] | nonBSJ supported | Exon |
circRNA 5':AAUCCACGUCUU 3' |:|| |:||| target 3':CUGGGGGUAGAC 5' |
-9.20 | 1 | RIC-seq |